Stable isotope-edited NMR analysis of Ascaris suum mitochondrial tRNA(Met) having a TV-Replacement loop

Takashi Ohtsuki, Gota Kawai, Kimitsuna Watanabe

Research output: Contribution to journalArticle

27 Citations (Scopus)

Abstract

Most nematode mitochondrial (mt) tRNAs have a TV-replacement loop (TV loop) which replaces the normal T arm and the variable loop in standard tRNAs with a less-structured loop. The tertiary structure of such tRNAs has been discussed theoretically with reference to the crystal structure of yeast tRNA(Phe) and examined experimentally by chemical and enzymatic probing. The results suggest that most regions of the tRNA other than the TV loop are folded in a similar manner to yeast tRNA(Phe). To confirm this notion more clearly, the tertiary structure of Ascaris suum mt tRNA(Met) was analyzed by NMR using various synthetic tRNAs site-specifically labeled with stable isotopes, which were prepared by a combination of chemical synthesis and enzymatic ligation. Tertiary interactions involving G(L2), G(L3), U(L4), and U8 were observed in the NMR spectra of the labeled tRNAs, but those relating to G(L5) were not. On the basis of these results, a possible tertiary structural model of nematode mitochondrial tRNA(Met) was constructed.

Original languageEnglish
Pages (from-to)28-34
Number of pages7
JournalJournal of Biochemistry
Volume124
Issue number1
Publication statusPublished - Jul 1998
Externally publishedYes

Fingerprint

RNA, Transfer, Met
Ascaris suum
Transfer RNA
Isotopes
Nuclear magnetic resonance
RNA, Transfer, Phe
Yeast
Yeasts
Structural Models
Ligation
Crystal structure

Keywords

  • Mitochondria
  • Nematode
  • NMR
  • Stable isotope
  • tRNA

ASJC Scopus subject areas

  • Biochemistry

Cite this

Stable isotope-edited NMR analysis of Ascaris suum mitochondrial tRNA(Met) having a TV-Replacement loop. / Ohtsuki, Takashi; Kawai, Gota; Watanabe, Kimitsuna.

In: Journal of Biochemistry, Vol. 124, No. 1, 07.1998, p. 28-34.

Research output: Contribution to journalArticle

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