Role of Asp193 in chromophore-protein interaction of pharaonis phoborhodopsin (sensory rhodopsin II)

Masayuki Iwamoto, Yuji Furutani, Yuki Sudo, Kazumi Shimono, Hideki Kandori, Naoki Kamo

Research output: Contribution to journalArticle

16 Citations (Scopus)

Abstract

Pharaonis phoborhodopsin (ppR; also pharaonis sensory rhodopsin II, psRII) is a receptor of the negative phototaxis of Natronobacterium pharaonis. By spectroscopic titration of D193N and D193E mutants, the PKa of the Schiff base was evaluated. Asp193 corresponds to Glu204 of bacteriorhodopsin (bR). The pKa of the Schiff base (SBH+) of D193N was ∼10.1-10.0 (at XH+) and ∼11.4-11.6 (at X) depending on the protonation state of a certain residue (designated by X) and independent of Cl-, whereas those of the wild type and D193E were >12. The pKa values of XH+ were ∼11.8-11.2 at the state of SB, 10.5 at SBH+ state in the presence of Cl-, and 9.6 at SBH+ without Cl-. These imply the presence of a long-range interaction in the extracellular channel. Asp193 was suggested to be deprotonated in the present dodecylmaltoside (DDM) solubilized wild-type ppR, which is contrary to Glu204 of bR. In the absence of salts, the irreversible denaturation of D193N (but not the wild type and D193E) occurred via a metastable state, into which the addition of Cl- reversed the intact pigment. This suggests that the negative charge at residue 193, which can be substituted by Cl-, is necessary to maintain the proper conformation in the DDM-solubilized ppR.

Original languageEnglish
Pages (from-to)1130-1135
Number of pages6
JournalBiophysical Journal
Volume83
Issue number2
Publication statusPublished - 2002
Externally publishedYes

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Sensory Rhodopsins
Bacteriorhodopsins
Schiff Bases
Natronobacterium
Proteins
Salts

ASJC Scopus subject areas

  • Biophysics

Cite this

Iwamoto, M., Furutani, Y., Sudo, Y., Shimono, K., Kandori, H., & Kamo, N. (2002). Role of Asp193 in chromophore-protein interaction of pharaonis phoborhodopsin (sensory rhodopsin II). Biophysical Journal, 83(2), 1130-1135.

Role of Asp193 in chromophore-protein interaction of pharaonis phoborhodopsin (sensory rhodopsin II). / Iwamoto, Masayuki; Furutani, Yuji; Sudo, Yuki; Shimono, Kazumi; Kandori, Hideki; Kamo, Naoki.

In: Biophysical Journal, Vol. 83, No. 2, 2002, p. 1130-1135.

Research output: Contribution to journalArticle

Iwamoto, M, Furutani, Y, Sudo, Y, Shimono, K, Kandori, H & Kamo, N 2002, 'Role of Asp193 in chromophore-protein interaction of pharaonis phoborhodopsin (sensory rhodopsin II)', Biophysical Journal, vol. 83, no. 2, pp. 1130-1135.
Iwamoto, Masayuki ; Furutani, Yuji ; Sudo, Yuki ; Shimono, Kazumi ; Kandori, Hideki ; Kamo, Naoki. / Role of Asp193 in chromophore-protein interaction of pharaonis phoborhodopsin (sensory rhodopsin II). In: Biophysical Journal. 2002 ; Vol. 83, No. 2. pp. 1130-1135.
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abstract = "Pharaonis phoborhodopsin (ppR; also pharaonis sensory rhodopsin II, psRII) is a receptor of the negative phototaxis of Natronobacterium pharaonis. By spectroscopic titration of D193N and D193E mutants, the PKa of the Schiff base was evaluated. Asp193 corresponds to Glu204 of bacteriorhodopsin (bR). The pKa of the Schiff base (SBH+) of D193N was ∼10.1-10.0 (at XH+) and ∼11.4-11.6 (at X) depending on the protonation state of a certain residue (designated by X) and independent of Cl-, whereas those of the wild type and D193E were >12. The pKa values of XH+ were ∼11.8-11.2 at the state of SB, 10.5 at SBH+ state in the presence of Cl-, and 9.6 at SBH+ without Cl-. These imply the presence of a long-range interaction in the extracellular channel. Asp193 was suggested to be deprotonated in the present dodecylmaltoside (DDM) solubilized wild-type ppR, which is contrary to Glu204 of bR. In the absence of salts, the irreversible denaturation of D193N (but not the wild type and D193E) occurred via a metastable state, into which the addition of Cl- reversed the intact pigment. This suggests that the negative charge at residue 193, which can be substituted by Cl-, is necessary to maintain the proper conformation in the DDM-solubilized ppR.",
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