Plant viruses and viroids in Japan

Shin ichi Fuji; Tomofumi Mochizuki; Mitsuru Okuda; Shinya Tsuda; Satoshi Kagiwada; Ken Taro Sekine; Masashi Ugaki; Keiko T. Natsuaki; Masamichi Isogai; Tetsuo Maoka; Minoru Takeshita; Nobuyuki Yoshikawa; Kazuyuki Mise; Takahide Sasaya; Hideki Kondo; Kenji Kubota; Yasuyuki Yamaji; Toru Iwanami; Kazusato Ohshima; Kappei Kobayashi; Tatsuji Hataya; Teruo Sano; Nobuhiro Suzuki

doi:10.1007/s10327-022-01051-y

Plant viruses and viroids in Japan

Shin ichi Fuji, Tomofumi Mochizuki, Mitsuru Okuda, Shinya Tsuda, Satoshi Kagiwada, Ken Taro Sekine, Masashi Ugaki, Keiko T. Natsuaki, Masamichi Isogai, Tetsuo Maoka, Minoru Takeshita, Nobuyuki Yoshikawa, Kazuyuki Mise, Takahide Sasaya, Hideki Kondo, Kenji Kubota, Yasuyuki Yamaji, Toru Iwanami, Kazusato Ohshima, Kappei KobayashiTatsuji Hataya, Teruo Sano, Nobuhiro Suzuki

Institute of Plant Science and Resources

Research output: Contribution to journal › Review article › peer-review

4 Citations (Scopus)

Abstract

An increasing number of plant viruses and viroids have been reported from all over the world due largely to metavirogenomics approaches with technological innovation. Herein, the official changes of virus taxonomy, including the establishment of megataxonomy and amendments of the codes of virus classification and nomenclature, recently made by the International Committee on Taxonomy of Viruses were summarized. The continued efforts of the plant virology community of Japan to index all plant viruses and viroids occurring in Japan, which represent 407 viruses, including 303 virus species and 104 unclassified viruses, and 25 viroids, including 20 species and 5 unclassified viroids, as of October 2021, were also introduced. These viruses and viroids are collectively classified into 81 genera within 26 families of 3 kingdoms (Shotokuvirae, Orthornavirae, Pararnavirae) across 2 realms (Monodnaviria and Riboviria). This review also overviewed how Japan’s plant virus/viroid studies have contributed to advance virus/viroid taxonomy.

Original language	English
Pages (from-to)	105-127
Number of pages	23
Journal	Journal of General Plant Pathology
Volume	88
Issue number	2
DOIs	https://doi.org/10.1007/s10327-022-01051-y
Publication status	Published - Mar 2022

Keywords

DNA virus
Plant quarantine
Plant virus
RNA virus
Viroid
Virus taxonomy

ASJC Scopus subject areas

Agronomy and Crop Science
Plant Science

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10.1007/s10327-022-01051-y

Cite this

Fuji, S. I., Mochizuki, T., Okuda, M., Tsuda, S., Kagiwada, S., Sekine, K. T., Ugaki, M., Natsuaki, K. T., Isogai, M., Maoka, T., Takeshita, M., Yoshikawa, N., Mise, K., Sasaya, T., Kondo, H., Kubota, K., Yamaji, Y., Iwanami, T., Ohshima, K., ... Suzuki, N. (2022). Plant viruses and viroids in Japan. Journal of General Plant Pathology, 88(2), 105-127. https://doi.org/10.1007/s10327-022-01051-y

Fuji, SI, Mochizuki, T, Okuda, M, Tsuda, S, Kagiwada, S, Sekine, KT, Ugaki, M, Natsuaki, KT, Isogai, M, Maoka, T, Takeshita, M, Yoshikawa, N, Mise, K, Sasaya, T, Kondo, H, Kubota, K, Yamaji, Y, Iwanami, T, Ohshima, K, Kobayashi, K, Hataya, T, Sano, T & Suzuki, N 2022, 'Plant viruses and viroids in Japan', Journal of General Plant Pathology, vol. 88, no. 2, pp. 105-127. https://doi.org/10.1007/s10327-022-01051-y

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abstract = "An increasing number of plant viruses and viroids have been reported from all over the world due largely to metavirogenomics approaches with technological innovation. Herein, the official changes of virus taxonomy, including the establishment of megataxonomy and amendments of the codes of virus classification and nomenclature, recently made by the International Committee on Taxonomy of Viruses were summarized. The continued efforts of the plant virology community of Japan to index all plant viruses and viroids occurring in Japan, which represent 407 viruses, including 303 virus species and 104 unclassified viruses, and 25 viroids, including 20 species and 5 unclassified viroids, as of October 2021, were also introduced. These viruses and viroids are collectively classified into 81 genera within 26 families of 3 kingdoms (Shotokuvirae, Orthornavirae, Pararnavirae) across 2 realms (Monodnaviria and Riboviria). This review also overviewed how Japan{\textquoteright}s plant virus/viroid studies have contributed to advance virus/viroid taxonomy.",

keywords = "DNA virus, Plant quarantine, Plant virus, RNA virus, Viroid, Virus taxonomy",

author = "Fuji, {Shin ichi} and Tomofumi Mochizuki and Mitsuru Okuda and Shinya Tsuda and Satoshi Kagiwada and Sekine, {Ken Taro} and Masashi Ugaki and Natsuaki, {Keiko T.} and Masamichi Isogai and Tetsuo Maoka and Minoru Takeshita and Nobuyuki Yoshikawa and Kazuyuki Mise and Takahide Sasaya and Hideki Kondo and Kenji Kubota and Yasuyuki Yamaji and Toru Iwanami and Kazusato Ohshima and Kappei Kobayashi and Tatsuji Hataya and Teruo Sano and Nobuhiro Suzuki",

note = "Funding Information: The authors are grateful to Dr. Satoshi T. Ohki for providing information on the establishment of the two PSJ committees: the Plant Virus Disease Study Group (PVDSG) and Plant Virus Taxonomy Committee (PVTC). The authors wish to thank the Editor-in-Chief, Dr. Yuki Ichinose for his invitation to contribute this article. Publisher Copyright: {\textcopyright} 2022, The Author(s).",

year = "2022",

month = mar,

doi = "10.1007/s10327-022-01051-y",

language = "English",

volume = "88",

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T1 - Plant viruses and viroids in Japan

AU - Fuji, Shin ichi

AU - Mochizuki, Tomofumi

AU - Okuda, Mitsuru

AU - Tsuda, Shinya

AU - Kagiwada, Satoshi

AU - Sekine, Ken Taro

AU - Ugaki, Masashi

AU - Natsuaki, Keiko T.

AU - Isogai, Masamichi

AU - Maoka, Tetsuo

AU - Takeshita, Minoru

AU - Yoshikawa, Nobuyuki

AU - Mise, Kazuyuki

AU - Sasaya, Takahide

AU - Kondo, Hideki

AU - Kubota, Kenji

AU - Yamaji, Yasuyuki

AU - Iwanami, Toru

AU - Ohshima, Kazusato

AU - Kobayashi, Kappei

AU - Hataya, Tatsuji

AU - Sano, Teruo

AU - Suzuki, Nobuhiro

N1 - Funding Information: The authors are grateful to Dr. Satoshi T. Ohki for providing information on the establishment of the two PSJ committees: the Plant Virus Disease Study Group (PVDSG) and Plant Virus Taxonomy Committee (PVTC). The authors wish to thank the Editor-in-Chief, Dr. Yuki Ichinose for his invitation to contribute this article. Publisher Copyright: © 2022, The Author(s).

PY - 2022/3

Y1 - 2022/3

N2 - An increasing number of plant viruses and viroids have been reported from all over the world due largely to metavirogenomics approaches with technological innovation. Herein, the official changes of virus taxonomy, including the establishment of megataxonomy and amendments of the codes of virus classification and nomenclature, recently made by the International Committee on Taxonomy of Viruses were summarized. The continued efforts of the plant virology community of Japan to index all plant viruses and viroids occurring in Japan, which represent 407 viruses, including 303 virus species and 104 unclassified viruses, and 25 viroids, including 20 species and 5 unclassified viroids, as of October 2021, were also introduced. These viruses and viroids are collectively classified into 81 genera within 26 families of 3 kingdoms (Shotokuvirae, Orthornavirae, Pararnavirae) across 2 realms (Monodnaviria and Riboviria). This review also overviewed how Japan’s plant virus/viroid studies have contributed to advance virus/viroid taxonomy.

AB - An increasing number of plant viruses and viroids have been reported from all over the world due largely to metavirogenomics approaches with technological innovation. Herein, the official changes of virus taxonomy, including the establishment of megataxonomy and amendments of the codes of virus classification and nomenclature, recently made by the International Committee on Taxonomy of Viruses were summarized. The continued efforts of the plant virology community of Japan to index all plant viruses and viroids occurring in Japan, which represent 407 viruses, including 303 virus species and 104 unclassified viruses, and 25 viroids, including 20 species and 5 unclassified viroids, as of October 2021, were also introduced. These viruses and viroids are collectively classified into 81 genera within 26 families of 3 kingdoms (Shotokuvirae, Orthornavirae, Pararnavirae) across 2 realms (Monodnaviria and Riboviria). This review also overviewed how Japan’s plant virus/viroid studies have contributed to advance virus/viroid taxonomy.

KW - DNA virus

KW - Plant quarantine

KW - Plant virus

KW - RNA virus

KW - Viroid

KW - Virus taxonomy

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M3 - Review article

AN - SCOPUS:85123076944

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SP - 105

EP - 127

JO - Journal of General Plant Pathology

JF - Journal of General Plant Pathology

SN - 1345-2630

IS - 2

ER -

Plant viruses and viroids in Japan

Abstract

Keywords

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