Phylogenetic Classification of Dof type Transcription Factors in Pea (Pisum sativum)

Naoki Nakamura, Mizuri Marutani, Shiroh Sanematsu, Kazuhiro Toyoda, Yoshi shige Inagaki, Tomonori Shiraishi, Yuki Ichinose

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

The Dof protein family is a group of plant transcription factors carrying highly conserved 52 residues referred to as the Dof domain, and belongs to the C4 zinc-finger transcription factors. We isolated various PsDof genes by PCR using the Dof-domain nucleotide sequence of the PsDofl gene from a cDNA library of elicitor-treated pea epicotyls, and these isolated PsDof genes were then classified phylogenetically. Since the obtained genes (PsDofl to PsDofT) were scattered over various positions of the phylogenetic tree, they were expected to perform various functions as Dof-type transcription factors. From their positions in the tree, it is expected that the PsDofZ and PsDof5 genes are defense related, as is the PsDofl gene.

Original languageEnglish
Pages (from-to)247-252
Number of pages6
JournalPlant Biotechnology
Volume20
Issue number3
DOIs
Publication statusPublished - 2003

Fingerprint

Peas
Pisum sativum
peas
Transcription Factors
transcription factors
taxonomy
phylogeny
Genes
genes
epicotyls
zinc finger motif
Zinc Fingers
Gene Library
cDNA libraries
nucleotide sequences
Polymerase Chain Reaction
Proteins
proteins

Keywords

  • elicitor
  • Mycosphaerella pinodes
  • phylogenetic tree
  • Pisum sativum
  • PsDof genes
  • transcription factor

ASJC Scopus subject areas

  • Biotechnology
  • Agronomy and Crop Science
  • Plant Science

Cite this

Phylogenetic Classification of Dof type Transcription Factors in Pea (Pisum sativum). / Nakamura, Naoki; Marutani, Mizuri; Sanematsu, Shiroh; Toyoda, Kazuhiro; Inagaki, Yoshi shige; Shiraishi, Tomonori; Ichinose, Yuki.

In: Plant Biotechnology, Vol. 20, No. 3, 2003, p. 247-252.

Research output: Contribution to journalArticle

Nakamura, Naoki ; Marutani, Mizuri ; Sanematsu, Shiroh ; Toyoda, Kazuhiro ; Inagaki, Yoshi shige ; Shiraishi, Tomonori ; Ichinose, Yuki. / Phylogenetic Classification of Dof type Transcription Factors in Pea (Pisum sativum). In: Plant Biotechnology. 2003 ; Vol. 20, No. 3. pp. 247-252.
@article{4d2fe7cef3fe4f4eb4c9ff026c8262de,
title = "Phylogenetic Classification of Dof type Transcription Factors in Pea (Pisum sativum)",
abstract = "The Dof protein family is a group of plant transcription factors carrying highly conserved 52 residues referred to as the Dof domain, and belongs to the C4 zinc-finger transcription factors. We isolated various PsDof genes by PCR using the Dof-domain nucleotide sequence of the PsDofl gene from a cDNA library of elicitor-treated pea epicotyls, and these isolated PsDof genes were then classified phylogenetically. Since the obtained genes (PsDofl to PsDofT) were scattered over various positions of the phylogenetic tree, they were expected to perform various functions as Dof-type transcription factors. From their positions in the tree, it is expected that the PsDofZ and PsDof5 genes are defense related, as is the PsDofl gene.",
keywords = "elicitor, Mycosphaerella pinodes, phylogenetic tree, Pisum sativum, PsDof genes, transcription factor",
author = "Naoki Nakamura and Mizuri Marutani and Shiroh Sanematsu and Kazuhiro Toyoda and Inagaki, {Yoshi shige} and Tomonori Shiraishi and Yuki Ichinose",
year = "2003",
doi = "10.5511/plantbiotechnology.20.247",
language = "English",
volume = "20",
pages = "247--252",
journal = "Plant Biotechnology",
issn = "1342-4580",
publisher = "Japanese Society for Plant Cell and Molecular Biology",
number = "3",

}

TY - JOUR

T1 - Phylogenetic Classification of Dof type Transcription Factors in Pea (Pisum sativum)

AU - Nakamura, Naoki

AU - Marutani, Mizuri

AU - Sanematsu, Shiroh

AU - Toyoda, Kazuhiro

AU - Inagaki, Yoshi shige

AU - Shiraishi, Tomonori

AU - Ichinose, Yuki

PY - 2003

Y1 - 2003

N2 - The Dof protein family is a group of plant transcription factors carrying highly conserved 52 residues referred to as the Dof domain, and belongs to the C4 zinc-finger transcription factors. We isolated various PsDof genes by PCR using the Dof-domain nucleotide sequence of the PsDofl gene from a cDNA library of elicitor-treated pea epicotyls, and these isolated PsDof genes were then classified phylogenetically. Since the obtained genes (PsDofl to PsDofT) were scattered over various positions of the phylogenetic tree, they were expected to perform various functions as Dof-type transcription factors. From their positions in the tree, it is expected that the PsDofZ and PsDof5 genes are defense related, as is the PsDofl gene.

AB - The Dof protein family is a group of plant transcription factors carrying highly conserved 52 residues referred to as the Dof domain, and belongs to the C4 zinc-finger transcription factors. We isolated various PsDof genes by PCR using the Dof-domain nucleotide sequence of the PsDofl gene from a cDNA library of elicitor-treated pea epicotyls, and these isolated PsDof genes were then classified phylogenetically. Since the obtained genes (PsDofl to PsDofT) were scattered over various positions of the phylogenetic tree, they were expected to perform various functions as Dof-type transcription factors. From their positions in the tree, it is expected that the PsDofZ and PsDof5 genes are defense related, as is the PsDofl gene.

KW - elicitor

KW - Mycosphaerella pinodes

KW - phylogenetic tree

KW - Pisum sativum

KW - PsDof genes

KW - transcription factor

UR - http://www.scopus.com/inward/record.url?scp=3242814440&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=3242814440&partnerID=8YFLogxK

U2 - 10.5511/plantbiotechnology.20.247

DO - 10.5511/plantbiotechnology.20.247

M3 - Article

VL - 20

SP - 247

EP - 252

JO - Plant Biotechnology

JF - Plant Biotechnology

SN - 1342-4580

IS - 3

ER -