Nucleotide sequence of rice dwarf phytoreovirus genome segment 2

Completion of sequence analyses of rice dwarf virus

Ichiro Uyeda, Narushi Suda, Naoki Yamada, Hiroshi Kudo, Kazunori Murao, Haruhisa Suga, Ikuo Kimura, Eishiro Shikata, Yoshilika Kitagawa, Tomonobe Kusano, Mikiko Sugawara, Nobuhiro Suzuki

Research output: Contribution to journalArticle

19 Citations (Scopus)

Abstract

The complete nucleotide sequence of rice dwarf phytoreovirus genome segment 2 (S2) was determined to be 3, 512 nucleotides long with one open reading frame initiating at nucleotide 15 and terminating at nucleotide 3363. The encoded polypeptide was predicted to have 1, 116 residues with a relative molecular weight of 123 kD. Comparison of S2 of two isolates showed they had identical lengths and 97 and 98.3% nucleotide and amino acid sequence identities, respectively. A search of the Swiss-Prot data base (R 22.0) failed to find any proteins with significant homology to the S2-encoded protein. Determination of the nucleotide sequence of the S2 has completed the sequence determination of the genome of rice dwarf virus. Homology searches made for proteins encoded by each of the genomic segments showed that the polypeptide encoded by SI 1 has similarity to histone H1 protein and VP6 of blue tongue virus, indicating it might possess nucleic acid binding properties.

Original languageEnglish
Pages (from-to)6-11
Number of pages6
JournalIntervirology
Volume37
Issue number1
DOIs
Publication statusPublished - 1994
Externally publishedYes

Fingerprint

Reoviridae
Sequence Analysis
Nucleotides
Genome
Viruses
Proteins
Bluetongue virus
Peptides
Histones
Nucleic Acids
Open Reading Frames
Amino Acid Sequence
Molecular Weight
Databases
Oryza

Keywords

  • Genome segment 2
  • Nucleotide sequence
  • Rice dwarf phytoreovirus

ASJC Scopus subject areas

  • Virology
  • Infectious Diseases

Cite this

Nucleotide sequence of rice dwarf phytoreovirus genome segment 2 : Completion of sequence analyses of rice dwarf virus. / Uyeda, Ichiro; Suda, Narushi; Yamada, Naoki; Kudo, Hiroshi; Murao, Kazunori; Suga, Haruhisa; Kimura, Ikuo; Shikata, Eishiro; Kitagawa, Yoshilika; Kusano, Tomonobe; Sugawara, Mikiko; Suzuki, Nobuhiro.

In: Intervirology, Vol. 37, No. 1, 1994, p. 6-11.

Research output: Contribution to journalArticle

Uyeda, I, Suda, N, Yamada, N, Kudo, H, Murao, K, Suga, H, Kimura, I, Shikata, E, Kitagawa, Y, Kusano, T, Sugawara, M & Suzuki, N 1994, 'Nucleotide sequence of rice dwarf phytoreovirus genome segment 2: Completion of sequence analyses of rice dwarf virus', Intervirology, vol. 37, no. 1, pp. 6-11. https://doi.org/10.1159/000150348
Uyeda, Ichiro ; Suda, Narushi ; Yamada, Naoki ; Kudo, Hiroshi ; Murao, Kazunori ; Suga, Haruhisa ; Kimura, Ikuo ; Shikata, Eishiro ; Kitagawa, Yoshilika ; Kusano, Tomonobe ; Sugawara, Mikiko ; Suzuki, Nobuhiro. / Nucleotide sequence of rice dwarf phytoreovirus genome segment 2 : Completion of sequence analyses of rice dwarf virus. In: Intervirology. 1994 ; Vol. 37, No. 1. pp. 6-11.
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