Karyotype evolution in Fusarium

Cees Waalwijk, Masatoki Taga, Song Lin Zheng, Robert H. Proctor, Martha M. Vaughan, Kerry O'Donnell

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

The germ tube burst method (GTBM) was employed to examine karyotypes of 33 Fusarium species representative of 11 species complexes that span the phylogenetic breadth of the genus. The karyotypes revealed that the nucleolar organizing region (NOR), which includes the ribosomal rDNA region, was telomeric in the species where it was discernible. Variable karyotypes were detected in eight species due to variation in numbers of putative core and/or supernumerary chromosomes. The putative core chromosome number (CN) was most variable in the F. solani (CN = 9?12) and F. buharicum (CN = 9+1 and 18-20) species complexes. Quantitative real-time PCR and genome sequence analysis rejected the hypothesis that the latter variation in CN was due to diploidization. The core CN in six other species complexes where two or more karyotypes were obtained was less variable or fixed. Karyotypes of 10 species in the sambucinum species complex, which is the most derived lineage of Fusarium, revealed that members of this complex possess the lowest CN in the genus. When viewed in context of the species phylogeny, karyotype evolution in Fusarium appears to have been dominated by a reduction in core CN in five closely related complexes that share a most recent common ancestor (tricinctum and incarnatum-equiseti CN = 8-9, chlamydosporum CN = 8, heterosporum CN = 7, sambucinum CN = 4-5) but not in the sister to these complexes (nisikadoi CN = 11, oxysporum CN = 11 and fujikuroi CN = 10-12). CN stability is best illustrated by the F. sambucinum subclade, where the only changes observed since it diverged from other fusaria appear to have involved two independent putative telomere to telomere fusions that reduced the core CN from five to four, once each in the sambucinum and graminearum subclades. Results of the present study indicate a core CN of 4 may be fixed in the latter subclade, which is further distinguished by the absence of putative supernumerary chromosomes. Karyotyping of fusaria in the not too distant future will be done by whole-genome sequencing such that each scaffold represents a complete chromosome from telomere to telomere. The CN data presented here should be of value to assist such full genome assembling.

Original languageEnglish
Pages (from-to)13-33
Number of pages21
JournalIMA Fungus
Volume9
Issue number1
DOIs
Publication statusPublished - Jan 1 2018

Fingerprint

karyotype
Fusarium
Karyotype
karyotyping
chromosome number
chromosome
Chromosomes
Telomere
Chromosomes, Human, Pair 8
Chromosomes, Human, Pair 9
telomeres
Chromosomes, Human, Pair 11
Chromosomes, Human, Pair 4
Genome
species complex
Karyotyping
Chromosomes, Human, Pair 10
Chromosomal Instability
Chromosomes, Human, Pair 7
genome

Keywords

  • Accessory
  • Chromosome
  • Genome
  • NOR
  • Pathogen
  • Phylogeny
  • qPCR
  • RPB1
  • RPB2
  • Supernumerary

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Agricultural and Biological Sciences (miscellaneous)

Cite this

Waalwijk, C., Taga, M., Zheng, S. L., Proctor, R. H., Vaughan, M. M., & O'Donnell, K. (2018). Karyotype evolution in Fusarium. IMA Fungus, 9(1), 13-33. https://doi.org/10.5598/IMAFUNGUS.2018.09.01.02

Karyotype evolution in Fusarium. / Waalwijk, Cees; Taga, Masatoki; Zheng, Song Lin; Proctor, Robert H.; Vaughan, Martha M.; O'Donnell, Kerry.

In: IMA Fungus, Vol. 9, No. 1, 01.01.2018, p. 13-33.

Research output: Contribution to journalArticle

Waalwijk, C, Taga, M, Zheng, SL, Proctor, RH, Vaughan, MM & O'Donnell, K 2018, 'Karyotype evolution in Fusarium', IMA Fungus, vol. 9, no. 1, pp. 13-33. https://doi.org/10.5598/IMAFUNGUS.2018.09.01.02
Waalwijk C, Taga M, Zheng SL, Proctor RH, Vaughan MM, O'Donnell K. Karyotype evolution in Fusarium. IMA Fungus. 2018 Jan 1;9(1):13-33. https://doi.org/10.5598/IMAFUNGUS.2018.09.01.02
Waalwijk, Cees ; Taga, Masatoki ; Zheng, Song Lin ; Proctor, Robert H. ; Vaughan, Martha M. ; O'Donnell, Kerry. / Karyotype evolution in Fusarium. In: IMA Fungus. 2018 ; Vol. 9, No. 1. pp. 13-33.
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