Identification of genome recombination among apple stem pitting virus isolates

Z. Li, Hideki Kondo, Andika Ida Bagus, P. Liu, L. Sun, Y. Wu

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

We have determined the complete genome sequence of an apple stem pitting virus isolate (ASPV,genus Foveavirus) from China,providing a new genome sequence of an ASPV isolate from apple trees. Nucleotide identities and phylogenetic relationships among this and another eleven complete sequences of ASPV isolates largely differed according to the coding regions of the genome analysed,suggesting the possible occurrence of recombination. Using recombination-detection programs,multiple recombination events throughout the ASPV genome were predicted to occur among isolates,regardless of their host species. Our analyses suggest that pervasive genome recombination drives the evolution and genetic diversity of ASPV.

Original languageEnglish
JournalJournal of Plant Pathology
Volume98
Issue number3
DOIs
Publication statusPublished - 2016

Fingerprint

Apple stem pitting virus
genome
Foveavirus
apples
nucleotides
genetic variation
China
phylogeny

Keywords

  • Apple stem pitting virus
  • Genome sequence
  • Recombination

ASJC Scopus subject areas

  • Plant Science

Cite this

Identification of genome recombination among apple stem pitting virus isolates. / Li, Z.; Kondo, Hideki; Ida Bagus, Andika; Liu, P.; Sun, L.; Wu, Y.

In: Journal of Plant Pathology, Vol. 98, No. 3, 2016.

Research output: Contribution to journalArticle

Li, Z. ; Kondo, Hideki ; Ida Bagus, Andika ; Liu, P. ; Sun, L. ; Wu, Y. / Identification of genome recombination among apple stem pitting virus isolates. In: Journal of Plant Pathology. 2016 ; Vol. 98, No. 3.
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