Genetic relationship of Allium grayi as assessed by simple sequence repeat markers

S. Guo, H. Tsukazaki, Kenji Kato

Research output: Chapter in Book/Report/Conference proceedingChapter

Abstract

A total of 12 polymerase chain reaction (PCR) primer pairs were used in genetic studies of wild Allium species (A. grayi R.) and its allied species (A. vineale). Those primer pairs derived from A. cepa and A. fistulosum revealed a lot of polymorphic amplicons among A. grayi collected from 36 different areas and A. vineale collected from 2 areas. 80 microsatellite markers were used for interspecific taxonomic analyses among those species. The data support the results obtained recently from performed karyotype and phylogeography analyses, suggesting the potential of microsatellite markers for use in evaluating the genetic relationship in A. grayi species. Direct sequencing of single amplicons derived from ACE008, ACE057, AFC03G02 was performed, showing the microsatellite motifs were contained in the amplified productions.

Original languageEnglish
Title of host publicationActa Horticulturae
Pages311-318
Number of pages8
Volume969
Publication statusPublished - Dec 10 2012

Publication series

NameActa Horticulturae
Volume969
ISSN (Print)05677572

Fingerprint

Allium
genetic relationships
microsatellite repeats
Allium vineale
Allium fistulosum
Allium cepa
phylogeography
karyotyping
polymerase chain reaction

Keywords

  • Allium
  • DNA polymorphism
  • Microsatellite markers

ASJC Scopus subject areas

  • Horticulture

Cite this

Guo, S., Tsukazaki, H., & Kato, K. (2012). Genetic relationship of Allium grayi as assessed by simple sequence repeat markers. In Acta Horticulturae (Vol. 969, pp. 311-318). (Acta Horticulturae; Vol. 969).

Genetic relationship of Allium grayi as assessed by simple sequence repeat markers. / Guo, S.; Tsukazaki, H.; Kato, Kenji.

Acta Horticulturae. Vol. 969 2012. p. 311-318 (Acta Horticulturae; Vol. 969).

Research output: Chapter in Book/Report/Conference proceedingChapter

Guo, S, Tsukazaki, H & Kato, K 2012, Genetic relationship of Allium grayi as assessed by simple sequence repeat markers. in Acta Horticulturae. vol. 969, Acta Horticulturae, vol. 969, pp. 311-318.
Guo S, Tsukazaki H, Kato K. Genetic relationship of Allium grayi as assessed by simple sequence repeat markers. In Acta Horticulturae. Vol. 969. 2012. p. 311-318. (Acta Horticulturae).
Guo, S. ; Tsukazaki, H. ; Kato, Kenji. / Genetic relationship of Allium grayi as assessed by simple sequence repeat markers. Acta Horticulturae. Vol. 969 2012. pp. 311-318 (Acta Horticulturae).
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