Flow cytometry-based method for isolating live bacteria with meta-cleavage activity on dihydroxy compounds of biphenyl

Sou Iijima, Yumi Shimomura, Yousuke Haba, Fusako Kawai, Akiwo Tani, Kazuhide Kimbara

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

A new method for isolating targeted live bacterial cells was established with the use of cell sorting by flow cytometry (FCM) based on the fluorescence of the intermediate metabolite of biphenyl degradation. During biphenyl degradation, a PCB degrader, Comamonas testosteroni TK102, produces a meta-cleavage intermediate metabolite, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid (HOPDA), which emits green fluorescence. HOPDA was produced from 2,3-dihydroxy biphenyl as a substrate, but it was not appropriate for labeling cells because it was released from the cells into the medium. When we used 4-n-butylbiphenyl and 4-n-heptylbiphenyl, we found that the cells produced and accumulated 2,3-dihydroxy intermediate metabolites. By the addition of synthesized 2,3-dihydroxy-4′-butylbiphenyl (2,3-DHBBP), we were able to label the cells with strong green fluorescence, suggesting the persistence of fluorescent intermediate metabolite in the cells by the introduction of the alkyl tail. 2,3-DHBBP was then used to label strain TK102 and the cells were sorted with FCM. The sorting efficiency of FCM was defined as the percentage of colony numbers per sorting events. Strain TK102 cells were successfully enriched by 4.1-fold from the mixture with environmental indigenous bacteria with a sorting efficiency of 7.3%. The method we present here serves as a basic technique for the specific and direct isolation of live bacterial cells which contain dioxygenases active on dihydroxylated aromatic compounds.

Original languageEnglish
Pages (from-to)645-651
Number of pages7
JournalJournal of Bioscience and Bioengineering
Volume109
Issue number6
DOIs
Publication statusPublished - Jun 2010

Fingerprint

Biphenyl Compounds
Flow cytometry
Metabolites
Sorting
Bacteria
Flow Cytometry
Fluorescence
Labels
Dioxygenases
Degradation
Acids
Aromatic compounds
Polychlorinated Biphenyls
Polychlorinated biphenyls
Labeling
Cells
Comamonas testosteroni
Substrates
diphenyl

Keywords

  • Alkylated derivative of biphenyl
  • Biphenyl degradation
  • Cell sorting
  • Environmental water
  • Flow cytometry
  • Fluorescent metabolite
  • Live bacterial cell
  • Meta-cleavage enzyme

ASJC Scopus subject areas

  • Biotechnology
  • Applied Microbiology and Biotechnology
  • Bioengineering

Cite this

Flow cytometry-based method for isolating live bacteria with meta-cleavage activity on dihydroxy compounds of biphenyl. / Iijima, Sou; Shimomura, Yumi; Haba, Yousuke; Kawai, Fusako; Tani, Akiwo; Kimbara, Kazuhide.

In: Journal of Bioscience and Bioengineering, Vol. 109, No. 6, 06.2010, p. 645-651.

Research output: Contribution to journalArticle

Iijima, Sou ; Shimomura, Yumi ; Haba, Yousuke ; Kawai, Fusako ; Tani, Akiwo ; Kimbara, Kazuhide. / Flow cytometry-based method for isolating live bacteria with meta-cleavage activity on dihydroxy compounds of biphenyl. In: Journal of Bioscience and Bioengineering. 2010 ; Vol. 109, No. 6. pp. 645-651.
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