Evolutionary history of teleost intron-containing and intron-less rhodopsin genes

Chihiro Fujiyabu, Keita Sato, Ni Made Laksmi Utari, Hideyo Ohuchi, Yoshinori Shichida, Takahiro Yamashita

Research output: Contribution to journalArticle

Abstract

Recent progress in whole genome sequencing has revealed that animals have various kinds of opsin genes for photoreception. Among them, most opsin genes have introns in their coding regions. However, it has been known for a long time that teleost retinas express intron-less rhodopsin genes, which are presumed to have been formed by retroduplication from an ancestral intron-containing rhodopsin gene. In addition, teleosts have an intron-containing rhodopsin gene (exo-rhodopsin) exclusively for pineal photoreception. In this study, to unravel the evolutionary origin of the two teleost rhodopsin genes, we analyzed the rhodopsin genes of non-teleost fishes in the Actinopterygii. The phylogenetic analysis of full-length sequences of bichir, sturgeon and gar rhodopsins revealed that retroduplication of the rhodopsin gene occurred after branching of the bichir lineage. In addition, analysis of the tissue distribution and the molecular properties of bichir, sturgeon and gar rhodopsins showed that the abundant and exclusive expression of intron-containing rhodopsin in the pineal gland and the short lifetime of its meta II intermediate, which leads to optimization for pineal photoreception, were achieved after branching of the gar lineage. Based on these results, we propose a stepwise evolutionary model of teleost intron-containing and intron-less rhodopsin genes.

Original languageEnglish
Article number10653
JournalScientific reports
Volume9
Issue number1
DOIs
Publication statusPublished - Dec 1 2019

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rhodopsin
introns
Lepisosteidae
genes
opsin
sturgeon
branching
pineal body
Actinopterygii
tissue distribution
retina

ASJC Scopus subject areas

  • General

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Evolutionary history of teleost intron-containing and intron-less rhodopsin genes. / Fujiyabu, Chihiro; Sato, Keita; Utari, Ni Made Laksmi; Ohuchi, Hideyo; Shichida, Yoshinori; Yamashita, Takahiro.

In: Scientific reports, Vol. 9, No. 1, 10653, 01.12.2019.

Research output: Contribution to journalArticle

Fujiyabu, Chihiro ; Sato, Keita ; Utari, Ni Made Laksmi ; Ohuchi, Hideyo ; Shichida, Yoshinori ; Yamashita, Takahiro. / Evolutionary history of teleost intron-containing and intron-less rhodopsin genes. In: Scientific reports. 2019 ; Vol. 9, No. 1.
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