Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba)

Walid El-Rodeny, Mitsuhiro Kimura, Hideki Hirakawa, Attia Sabah, Kenta Shirasawa, Shusei Sato, Satoshi Tabata, Shigemi Sasamoto, Akiko Watanabe, Kumiko Kawashima, Midori Kato, Tsuyuko Wada, Hisano Tsuruoka, Chika Takahashi, Chiharu Minami, Keiko Nanri, Shinobu Nakayama, Mitsuyo Kohara, Manabu Yamada, Yoshie KishidaTsunakazu Fujishiro, Sachiko Isobe

Research output: Contribution to journalArticle

15 Citations (Scopus)

Abstract

To develop a high density linkage map in faba bean, a total of 1,363 FBES (Faba bean expressed sequence tag [EST]-derived simple sequence repeat [SSR]) markers were designed based on 5,090 non-redundant ESTs developed in this study. A total of 109 plants of a ‘Nubaria 2’ × ‘Misr 3’ F2 mapping population were used for map construction. Because the parents were not pure homozygous lines, the 109 F2 plants were divided into three subpopulations according to the original F1 plants. Linkage groups (LGs) generated in each subpopulation were integrated by commonly mapped markers. The integrated ‘Nubaria 2’ × ‘Misr 3’ map consisted of six LGs, representing a total length of 684.7 cM, with 552 loci. Of the mapped loci, 47% were generated from multi-loci diagnostic (MLD) markers. Alignment of homologous sequence pairs along each linkage group revealed obvious syntenic relationships between LGs in faba bean and the genomes of two model legumes, Lotus japonicus and Medicago truncatula. In a polymorphic analysis with ten Egyptian faba bean varieties, 78.9% (384/487) of the FBES markers showed polymorphisms. Along with the EST-SSR markers, the dense map developed in this study is expected to accelerate marker assisted breeding in faba bean.

Original languageEnglish
Pages (from-to)252-263
Number of pages12
JournalBreeding Science
Volume64
Issue number3
DOIs
Publication statusPublished - Sep 1 2014
Externally publishedYes

Fingerprint

Vicia faba
Expressed Sequence Tags
faba beans
expressed sequence tags
Microsatellite Repeats
chromosome mapping
linkage groups
microsatellite repeats
loci
Medicago truncatula
Lotus corniculatus var. japonicus
Sequence Homology
sequence homology
Fabaceae
Breeding
legumes
genetic polymorphism
Genome
genome
breeding

Keywords

  • Comparative mapping
  • EST-SSR
  • Faba bean
  • Genetic diversity
  • Linkage map

ASJC Scopus subject areas

  • Agronomy and Crop Science
  • Genetics
  • Plant Science

Cite this

El-Rodeny, W., Kimura, M., Hirakawa, H., Sabah, A., Shirasawa, K., Sato, S., ... Isobe, S. (2014). Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba). Breeding Science, 64(3), 252-263. https://doi.org/10.1270/jsbbs.64.252

Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba). / El-Rodeny, Walid; Kimura, Mitsuhiro; Hirakawa, Hideki; Sabah, Attia; Shirasawa, Kenta; Sato, Shusei; Tabata, Satoshi; Sasamoto, Shigemi; Watanabe, Akiko; Kawashima, Kumiko; Kato, Midori; Wada, Tsuyuko; Tsuruoka, Hisano; Takahashi, Chika; Minami, Chiharu; Nanri, Keiko; Nakayama, Shinobu; Kohara, Mitsuyo; Yamada, Manabu; Kishida, Yoshie; Fujishiro, Tsunakazu; Isobe, Sachiko.

In: Breeding Science, Vol. 64, No. 3, 01.09.2014, p. 252-263.

Research output: Contribution to journalArticle

El-Rodeny, W, Kimura, M, Hirakawa, H, Sabah, A, Shirasawa, K, Sato, S, Tabata, S, Sasamoto, S, Watanabe, A, Kawashima, K, Kato, M, Wada, T, Tsuruoka, H, Takahashi, C, Minami, C, Nanri, K, Nakayama, S, Kohara, M, Yamada, M, Kishida, Y, Fujishiro, T & Isobe, S 2014, 'Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba)', Breeding Science, vol. 64, no. 3, pp. 252-263. https://doi.org/10.1270/jsbbs.64.252
El-Rodeny W, Kimura M, Hirakawa H, Sabah A, Shirasawa K, Sato S et al. Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba). Breeding Science. 2014 Sep 1;64(3):252-263. https://doi.org/10.1270/jsbbs.64.252
El-Rodeny, Walid ; Kimura, Mitsuhiro ; Hirakawa, Hideki ; Sabah, Attia ; Shirasawa, Kenta ; Sato, Shusei ; Tabata, Satoshi ; Sasamoto, Shigemi ; Watanabe, Akiko ; Kawashima, Kumiko ; Kato, Midori ; Wada, Tsuyuko ; Tsuruoka, Hisano ; Takahashi, Chika ; Minami, Chiharu ; Nanri, Keiko ; Nakayama, Shinobu ; Kohara, Mitsuyo ; Yamada, Manabu ; Kishida, Yoshie ; Fujishiro, Tsunakazu ; Isobe, Sachiko. / Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba). In: Breeding Science. 2014 ; Vol. 64, No. 3. pp. 252-263.
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AU - Sato, Shusei

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AU - Kato, Midori

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