Developing transposable element marker system for molecular breeding

R. S. Bhat, K. Shirasawa, Y. Monden, H. Yamashita, M. Tahara

Research output: Chapter in Book/Report/Conference proceedingChapter

Abstract

Transposable element (TE) marker system was developed considering the useful properties of the transposable elements such as their large number in the animal and plant genomes, high rate of insertion polymorphism, and ease of detection. Various methods have been employed for developing a large number of TE markers in several crop plants for genomics studies. Here we describe some of these methods including the recent whole genome search. We also review the application of TE markers in molecular breeding.

Original languageEnglish
Title of host publicationMethods in Molecular Biology
PublisherHumana Press Inc.
Pages233-251
Number of pages19
DOIs
Publication statusPublished - Jan 1 2020

Publication series

NameMethods in Molecular Biology
Volume2107
ISSN (Print)1064-3745
ISSN (Electronic)1940-6029

Fingerprint

DNA Shuffling
DNA Transposable Elements
Plant Genome
Genomics
Genome

Keywords

  • Application of transposable element marker system in molecular breeding
  • Suppression PCR
  • Transposable element marker system
  • Transposon display
  • Whole genome in silico search for AhMITE1

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics

Cite this

Bhat, R. S., Shirasawa, K., Monden, Y., Yamashita, H., & Tahara, M. (2020). Developing transposable element marker system for molecular breeding. In Methods in Molecular Biology (pp. 233-251). (Methods in Molecular Biology; Vol. 2107). Humana Press Inc.. https://doi.org/10.1007/978-1-0716-0235-5_11

Developing transposable element marker system for molecular breeding. / Bhat, R. S.; Shirasawa, K.; Monden, Y.; Yamashita, H.; Tahara, M.

Methods in Molecular Biology. Humana Press Inc., 2020. p. 233-251 (Methods in Molecular Biology; Vol. 2107).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bhat, RS, Shirasawa, K, Monden, Y, Yamashita, H & Tahara, M 2020, Developing transposable element marker system for molecular breeding. in Methods in Molecular Biology. Methods in Molecular Biology, vol. 2107, Humana Press Inc., pp. 233-251. https://doi.org/10.1007/978-1-0716-0235-5_11
Bhat RS, Shirasawa K, Monden Y, Yamashita H, Tahara M. Developing transposable element marker system for molecular breeding. In Methods in Molecular Biology. Humana Press Inc. 2020. p. 233-251. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-0716-0235-5_11
Bhat, R. S. ; Shirasawa, K. ; Monden, Y. ; Yamashita, H. ; Tahara, M. / Developing transposable element marker system for molecular breeding. Methods in Molecular Biology. Humana Press Inc., 2020. pp. 233-251 (Methods in Molecular Biology).
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