Abstract
In plants, sequence-specific DNA-binding transcription factors (TFs) are key molecular switches that control a wide range of biological processes from plant growth and development to responses to environmental stimuli. The availability of the whole genome sequences of several legume species, such as soybean (Glycine max), Lotus japonicus, and Medicago truncatula, has enabled the research community to carry out large-scale data mining to identify and annotate their TF repertoires for functional and comparative genomics. Individual TF and its families with relevant information including sequence and domain features, predicted tertiary structures, domain alignments, gene ontology assignment and sequence comparison; information on the available full-length cDNAs, identity, and positions of all types of known cis-motifs found in the promoter regions, gene expression are accessible at species-specific and/or integrative TF databases.
| Original language | English |
|---|---|
| Title of host publication | Biological Nitrogen Fixation |
| Publisher | Wiley Blackwell |
| Pages | 817-822 |
| Number of pages | 6 |
| Volume | 2-2 |
| ISBN (Electronic) | 9781119053095 |
| ISBN (Print) | 9781118637043 |
| DOIs | |
| Publication status | Published - Jan 1 2015 |
| Externally published | Yes |
Fingerprint
Keywords
- cis-element
- Database
- Expression
- Gene ontology
- Legume
- Transcription factor
ASJC Scopus subject areas
- Immunology and Microbiology(all)
Cite this
Databases of Transcription Factors in Legumes. / Mochida, Keiichi; Van Ha, Chien; Sulieman, Saad; Van Dong, Nguyen; Phan Tran, Lam Son.
Biological Nitrogen Fixation. Vol. 2-2 Wiley Blackwell, 2015. p. 817-822.Research output: Chapter in Book/Report/Conference proceeding › Chapter
}
TY - CHAP
T1 - Databases of Transcription Factors in Legumes
AU - Mochida, Keiichi
AU - Van Ha, Chien
AU - Sulieman, Saad
AU - Van Dong, Nguyen
AU - Phan Tran, Lam Son
PY - 2015/1/1
Y1 - 2015/1/1
N2 - In plants, sequence-specific DNA-binding transcription factors (TFs) are key molecular switches that control a wide range of biological processes from plant growth and development to responses to environmental stimuli. The availability of the whole genome sequences of several legume species, such as soybean (Glycine max), Lotus japonicus, and Medicago truncatula, has enabled the research community to carry out large-scale data mining to identify and annotate their TF repertoires for functional and comparative genomics. Individual TF and its families with relevant information including sequence and domain features, predicted tertiary structures, domain alignments, gene ontology assignment and sequence comparison; information on the available full-length cDNAs, identity, and positions of all types of known cis-motifs found in the promoter regions, gene expression are accessible at species-specific and/or integrative TF databases.
AB - In plants, sequence-specific DNA-binding transcription factors (TFs) are key molecular switches that control a wide range of biological processes from plant growth and development to responses to environmental stimuli. The availability of the whole genome sequences of several legume species, such as soybean (Glycine max), Lotus japonicus, and Medicago truncatula, has enabled the research community to carry out large-scale data mining to identify and annotate their TF repertoires for functional and comparative genomics. Individual TF and its families with relevant information including sequence and domain features, predicted tertiary structures, domain alignments, gene ontology assignment and sequence comparison; information on the available full-length cDNAs, identity, and positions of all types of known cis-motifs found in the promoter regions, gene expression are accessible at species-specific and/or integrative TF databases.
KW - cis-element
KW - Database
KW - Expression
KW - Gene ontology
KW - Legume
KW - Transcription factor
UR - http://www.scopus.com/inward/record.url?scp=84985019395&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84985019395&partnerID=8YFLogxK
U2 - 10.1002/9781119053095.ch81
DO - 10.1002/9781119053095.ch81
M3 - Chapter
AN - SCOPUS:84985019395
SN - 9781118637043
VL - 2-2
SP - 817
EP - 822
BT - Biological Nitrogen Fixation
PB - Wiley Blackwell
ER -