Abstract
Cymbidium chlorotic mosaic virus (CyCMV), isolated from a spring orchid (Cymbidium goeringii), was characterized molecularly. CyCMV isometric virions comprise a single, positive-strand RNA genome of 4,083 nucleotides and 30-kDa coat protein. The virus genome contains five overlapping open reading frames with a genomic organization similar to that of sobemoviruses. BLAST searches and phylogenetic analysis revealed that CyCMV is most closely related to papaya lethal yellowing virus, a proposed dicot-infecting sobemovirus (58.8 % nucleotide sequence identity), but has a relatively distant relationship to monocot-infecting sobemoviruses, with only modest sequence identities. This suggests that CyCMV is a new monocot-infecting member of the floating genus Sobemovirus.
| Original language | English |
|---|---|
| Pages (from-to) | 2099-2104 |
| Number of pages | 6 |
| Journal | Archives of Virology |
| Volume | 160 |
| Issue number | 8 |
| DOIs | |
| Publication status | Published - May 31 2015 |
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ASJC Scopus subject areas
- Virology
- Medicine(all)
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Cymbidium chlorotic mosaic virus, a new sobemovirus isolated from a spring orchid (Cymbidium goeringii) in Japan. / Kondo, Hideki; Takemoto, Shogo; Maruyama, Kazuyuki; Chiba, Sotaro; Ida Bagus, Andika; Suzuki, Nobuhiro.
In: Archives of Virology, Vol. 160, No. 8, 31.05.2015, p. 2099-2104.Research output: Contribution to journal › Article
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TY - JOUR
T1 - Cymbidium chlorotic mosaic virus, a new sobemovirus isolated from a spring orchid (Cymbidium goeringii) in Japan
AU - Kondo, Hideki
AU - Takemoto, Shogo
AU - Maruyama, Kazuyuki
AU - Chiba, Sotaro
AU - Ida Bagus, Andika
AU - Suzuki, Nobuhiro
PY - 2015/5/31
Y1 - 2015/5/31
N2 - Cymbidium chlorotic mosaic virus (CyCMV), isolated from a spring orchid (Cymbidium goeringii), was characterized molecularly. CyCMV isometric virions comprise a single, positive-strand RNA genome of 4,083 nucleotides and 30-kDa coat protein. The virus genome contains five overlapping open reading frames with a genomic organization similar to that of sobemoviruses. BLAST searches and phylogenetic analysis revealed that CyCMV is most closely related to papaya lethal yellowing virus, a proposed dicot-infecting sobemovirus (58.8 % nucleotide sequence identity), but has a relatively distant relationship to monocot-infecting sobemoviruses, with only modest sequence identities. This suggests that CyCMV is a new monocot-infecting member of the floating genus Sobemovirus.
AB - Cymbidium chlorotic mosaic virus (CyCMV), isolated from a spring orchid (Cymbidium goeringii), was characterized molecularly. CyCMV isometric virions comprise a single, positive-strand RNA genome of 4,083 nucleotides and 30-kDa coat protein. The virus genome contains five overlapping open reading frames with a genomic organization similar to that of sobemoviruses. BLAST searches and phylogenetic analysis revealed that CyCMV is most closely related to papaya lethal yellowing virus, a proposed dicot-infecting sobemovirus (58.8 % nucleotide sequence identity), but has a relatively distant relationship to monocot-infecting sobemoviruses, with only modest sequence identities. This suggests that CyCMV is a new monocot-infecting member of the floating genus Sobemovirus.
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UR - http://www.scopus.com/inward/citedby.url?scp=84938993296&partnerID=8YFLogxK
U2 - 10.1007/s00705-015-2460-9
DO - 10.1007/s00705-015-2460-9
M3 - Article
C2 - 26025156
AN - SCOPUS:84938993296
VL - 160
SP - 2099
EP - 2104
JO - Archives of Virology
JF - Archives of Virology
SN - 0304-8608
IS - 8
ER -