Complete genome sequence of Habenaria mosaic virus, a new potyvirus infecting a terrestrial orchid (Habenaria radiata) in Japan

Hideki Kondo, Takanori Maeda, I. Wayan Gara, Sotaro Chiba, Kazuyuki Maruyama, Tetsuo Tamada, Nobuhiro Suzuki

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

The complete genomic sequence of Habenaria mosaic virus (HaMV), which infects terrestrial orchids (Habenaria radiata), has been determined. The genome is composed of 9,499 nucleotides excluding the 3′-terminal poly(A) tail, encoding a large polyprotein of 3,054 amino acids with the genomic features typical of a potyvirus. Putative proteolytic cleavage sites were identified by sequence comparison to those of known potyviruses. The HaMV polyprotein showed 58 % amino acid sequence identity to that encoded by the most closely related potyvirus, tobacco vein banding mosaic virus. Phylogenetic analysis of the polyprotein amino acid sequence and its coding sequences confirmed that HaMV formed a cluster with the chilli veinal mottle virus group, most of which infect solanaceous plants. These results suggest that HaMV is a distinct member of the genus Potyvirus.

Original languageEnglish
Pages (from-to)163-166
Number of pages4
JournalArchives of Virology
Volume159
Issue number1
DOIs
Publication statusPublished - 2014

Fingerprint

Potyvirus
Mosaic Viruses
Japan
Polyproteins
Genome
Protein Sequence Analysis
Tobacco
Amino Acid Sequence
Veins
Nucleotides
Viruses
Amino Acids
Messenger RNA

ASJC Scopus subject areas

  • Virology

Cite this

Complete genome sequence of Habenaria mosaic virus, a new potyvirus infecting a terrestrial orchid (Habenaria radiata) in Japan. / Kondo, Hideki; Maeda, Takanori; Gara, I. Wayan; Chiba, Sotaro; Maruyama, Kazuyuki; Tamada, Tetsuo; Suzuki, Nobuhiro.

In: Archives of Virology, Vol. 159, No. 1, 2014, p. 163-166.

Research output: Contribution to journalArticle

Kondo, Hideki ; Maeda, Takanori ; Gara, I. Wayan ; Chiba, Sotaro ; Maruyama, Kazuyuki ; Tamada, Tetsuo ; Suzuki, Nobuhiro. / Complete genome sequence of Habenaria mosaic virus, a new potyvirus infecting a terrestrial orchid (Habenaria radiata) in Japan. In: Archives of Virology. 2014 ; Vol. 159, No. 1. pp. 163-166.
@article{7514ac038657487eba1f4e429ab04ff2,
title = "Complete genome sequence of Habenaria mosaic virus, a new potyvirus infecting a terrestrial orchid (Habenaria radiata) in Japan",
abstract = "The complete genomic sequence of Habenaria mosaic virus (HaMV), which infects terrestrial orchids (Habenaria radiata), has been determined. The genome is composed of 9,499 nucleotides excluding the 3′-terminal poly(A) tail, encoding a large polyprotein of 3,054 amino acids with the genomic features typical of a potyvirus. Putative proteolytic cleavage sites were identified by sequence comparison to those of known potyviruses. The HaMV polyprotein showed 58 {\%} amino acid sequence identity to that encoded by the most closely related potyvirus, tobacco vein banding mosaic virus. Phylogenetic analysis of the polyprotein amino acid sequence and its coding sequences confirmed that HaMV formed a cluster with the chilli veinal mottle virus group, most of which infect solanaceous plants. These results suggest that HaMV is a distinct member of the genus Potyvirus.",
author = "Hideki Kondo and Takanori Maeda and Gara, {I. Wayan} and Sotaro Chiba and Kazuyuki Maruyama and Tetsuo Tamada and Nobuhiro Suzuki",
year = "2014",
doi = "10.1007/s00705-013-1784-6",
language = "English",
volume = "159",
pages = "163--166",
journal = "Archives of Virology",
issn = "0304-8608",
publisher = "Springer Wien",
number = "1",

}

TY - JOUR

T1 - Complete genome sequence of Habenaria mosaic virus, a new potyvirus infecting a terrestrial orchid (Habenaria radiata) in Japan

AU - Kondo, Hideki

AU - Maeda, Takanori

AU - Gara, I. Wayan

AU - Chiba, Sotaro

AU - Maruyama, Kazuyuki

AU - Tamada, Tetsuo

AU - Suzuki, Nobuhiro

PY - 2014

Y1 - 2014

N2 - The complete genomic sequence of Habenaria mosaic virus (HaMV), which infects terrestrial orchids (Habenaria radiata), has been determined. The genome is composed of 9,499 nucleotides excluding the 3′-terminal poly(A) tail, encoding a large polyprotein of 3,054 amino acids with the genomic features typical of a potyvirus. Putative proteolytic cleavage sites were identified by sequence comparison to those of known potyviruses. The HaMV polyprotein showed 58 % amino acid sequence identity to that encoded by the most closely related potyvirus, tobacco vein banding mosaic virus. Phylogenetic analysis of the polyprotein amino acid sequence and its coding sequences confirmed that HaMV formed a cluster with the chilli veinal mottle virus group, most of which infect solanaceous plants. These results suggest that HaMV is a distinct member of the genus Potyvirus.

AB - The complete genomic sequence of Habenaria mosaic virus (HaMV), which infects terrestrial orchids (Habenaria radiata), has been determined. The genome is composed of 9,499 nucleotides excluding the 3′-terminal poly(A) tail, encoding a large polyprotein of 3,054 amino acids with the genomic features typical of a potyvirus. Putative proteolytic cleavage sites were identified by sequence comparison to those of known potyviruses. The HaMV polyprotein showed 58 % amino acid sequence identity to that encoded by the most closely related potyvirus, tobacco vein banding mosaic virus. Phylogenetic analysis of the polyprotein amino acid sequence and its coding sequences confirmed that HaMV formed a cluster with the chilli veinal mottle virus group, most of which infect solanaceous plants. These results suggest that HaMV is a distinct member of the genus Potyvirus.

UR - http://www.scopus.com/inward/record.url?scp=84893776060&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84893776060&partnerID=8YFLogxK

U2 - 10.1007/s00705-013-1784-6

DO - 10.1007/s00705-013-1784-6

M3 - Article

C2 - 23857506

AN - SCOPUS:84893776060

VL - 159

SP - 163

EP - 166

JO - Archives of Virology

JF - Archives of Virology

SN - 0304-8608

IS - 1

ER -