Abstract
The complete genomic sequence of Habenaria mosaic virus (HaMV), which infects terrestrial orchids (Habenaria radiata), has been determined. The genome is composed of 9,499 nucleotides excluding the 3′-terminal poly(A) tail, encoding a large polyprotein of 3,054 amino acids with the genomic features typical of a potyvirus. Putative proteolytic cleavage sites were identified by sequence comparison to those of known potyviruses. The HaMV polyprotein showed 58 % amino acid sequence identity to that encoded by the most closely related potyvirus, tobacco vein banding mosaic virus. Phylogenetic analysis of the polyprotein amino acid sequence and its coding sequences confirmed that HaMV formed a cluster with the chilli veinal mottle virus group, most of which infect solanaceous plants. These results suggest that HaMV is a distinct member of the genus Potyvirus.
| Original language | English |
|---|---|
| Pages (from-to) | 163-166 |
| Number of pages | 4 |
| Journal | Archives of Virology |
| Volume | 159 |
| Issue number | 1 |
| DOIs | |
| Publication status | Published - 2014 |
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ASJC Scopus subject areas
- Virology
Cite this
Complete genome sequence of Habenaria mosaic virus, a new potyvirus infecting a terrestrial orchid (Habenaria radiata) in Japan. / Kondo, Hideki; Maeda, Takanori; Gara, I. Wayan; Chiba, Sotaro; Maruyama, Kazuyuki; Tamada, Tetsuo; Suzuki, Nobuhiro.
In: Archives of Virology, Vol. 159, No. 1, 2014, p. 163-166.Research output: Contribution to journal › Article
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TY - JOUR
T1 - Complete genome sequence of Habenaria mosaic virus, a new potyvirus infecting a terrestrial orchid (Habenaria radiata) in Japan
AU - Kondo, Hideki
AU - Maeda, Takanori
AU - Gara, I. Wayan
AU - Chiba, Sotaro
AU - Maruyama, Kazuyuki
AU - Tamada, Tetsuo
AU - Suzuki, Nobuhiro
PY - 2014
Y1 - 2014
N2 - The complete genomic sequence of Habenaria mosaic virus (HaMV), which infects terrestrial orchids (Habenaria radiata), has been determined. The genome is composed of 9,499 nucleotides excluding the 3′-terminal poly(A) tail, encoding a large polyprotein of 3,054 amino acids with the genomic features typical of a potyvirus. Putative proteolytic cleavage sites were identified by sequence comparison to those of known potyviruses. The HaMV polyprotein showed 58 % amino acid sequence identity to that encoded by the most closely related potyvirus, tobacco vein banding mosaic virus. Phylogenetic analysis of the polyprotein amino acid sequence and its coding sequences confirmed that HaMV formed a cluster with the chilli veinal mottle virus group, most of which infect solanaceous plants. These results suggest that HaMV is a distinct member of the genus Potyvirus.
AB - The complete genomic sequence of Habenaria mosaic virus (HaMV), which infects terrestrial orchids (Habenaria radiata), has been determined. The genome is composed of 9,499 nucleotides excluding the 3′-terminal poly(A) tail, encoding a large polyprotein of 3,054 amino acids with the genomic features typical of a potyvirus. Putative proteolytic cleavage sites were identified by sequence comparison to those of known potyviruses. The HaMV polyprotein showed 58 % amino acid sequence identity to that encoded by the most closely related potyvirus, tobacco vein banding mosaic virus. Phylogenetic analysis of the polyprotein amino acid sequence and its coding sequences confirmed that HaMV formed a cluster with the chilli veinal mottle virus group, most of which infect solanaceous plants. These results suggest that HaMV is a distinct member of the genus Potyvirus.
UR - http://www.scopus.com/inward/record.url?scp=84893776060&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84893776060&partnerID=8YFLogxK
U2 - 10.1007/s00705-013-1784-6
DO - 10.1007/s00705-013-1784-6
M3 - Article
C2 - 23857506
AN - SCOPUS:84893776060
VL - 159
SP - 163
EP - 166
JO - Archives of Virology
JF - Archives of Virology
SN - 0304-8608
IS - 1
ER -