Collaborative simulation grid: Multiscale quantum-mechanical/classical atomistic simulations on distributed PC clusters in the US and Japan

Hideaki Kikuchi, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, Hiroshi Iyetomi, Shuji Ogata, Takahisa Kouno, Fuyuki Shimojo, Kenji Tsuruta, Subhash Saini

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Citations (Scopus)

Abstract

A multidisciplinary, collaborative simulation has been performed on a Grid of geographically distributed PC clusters. The multiscale simulation approach seamlessly combines i) atomistic simulation based on the molecular dynamics (MD) method and ii) quantum mechanical (QM) calculation based on the density functional theory (DFT), so that accurate but less scalable computations are performed only where they are needed. The multiscale MD/QM simulation code has been Grid-enabled using i) a modular, additive hybridization scheme, ii) multiple QM clustering, and iii) computation/communication overlapping. The Gridified MD/QM simulation code has been used to study environmental effects of water molecules on fracture in silicon. A preliminary run of the code has achieved a parallel efficiency of 94% on 25 PCs distributed over 3 PC clusters in the US and Japan, and a larger test involving 154 processors on 5 distributed PC clusters is in progress.

Original languageEnglish
Title of host publicationProceedings of the IEEE/ACM SC 2002 Conference, SC 2002
PublisherAssociation for Computing Machinery
ISBN (Electronic)076951524X
DOIs
Publication statusPublished - 2002
Event2002 IEEE/ACM Conference on Supercomputing, SC 2002 - Baltimore, United States
Duration: Nov 16 2002Nov 22 2002

Publication series

NameProceedings of the International Conference on Supercomputing
Volume2002-November

Conference

Conference2002 IEEE/ACM Conference on Supercomputing, SC 2002
Country/TerritoryUnited States
CityBaltimore
Period11/16/0211/22/02

Keywords

  • Density functional theory
  • Grid application
  • Molecular dynamics
  • Multiscale simulation
  • Quantum mechanics

ASJC Scopus subject areas

  • Computer Science(all)

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