TY - JOUR
T1 - A three states model for hydrogen abstraction reactions with the cytochrome P450 compound I is revisited. Isolobal and isospin analogy among Fe(IV)=O, O = O and O
AU - Miyagawa, Koichi
AU - Isobe, Hiroshi
AU - Shoji, Mitsuo
AU - Kawakami, Takashi
AU - Yamanaka, Shusuke
AU - Yamaguchi, Kizashi
N1 - Funding Information:
The computations were performed using Research Center for Computational Science (RCCS), Okazaki, Japan. This work has been supported by a Grants-in-Aid for Scientific Research on Innovation Areas No. 17H06433 (KY) by the Ministry of Education, Culture, Sports, Science and Technology (MEXT) of Japan. MS thanks the JSPS KAKENHI grant numbers 18H05154 and 20H05088 , and JST PRESTO Grant Number JPMJPR19G6 , Japan.
Publisher Copyright:
© 2020 Elsevier B.V.
PY - 2021/1/15
Y1 - 2021/1/15
N2 - Radical abstraction reactions by the cytochrome P450 compound I are investigated on the basis of the one quartet two doublet model consisted of three configurations; 4{2[↑• +Por]–[↑• 3Fe(IV)=O •↑]} (4CpdI; S = 3/2), 2{2[↓• +Por]–[↑• 3Fe(IV)=O •↑]} (2CpdIa; S = 1/2) and 2{1[Por(↑↓)]–2[↑• Fe(V)=O]} (2CpdIb; S = 1/2) where Por denotes porphyrin and axial cysteine anion (–SR) is neglected. The dπ-pπ bond of 2CpdIb was highly spin-polarized in the transition-state region of hydrogen abstraction reactions, providing the doublet configuration; 2{1[Por(↑↓)]–2[↑↑•• Fe(IV)–O •↓]} (2CpdIb,oxyl). The oxyl-radical character of 2CpdIb,oxyl plays an important role for hydrogen radical abstraction from alkanes. The spin populations on the iron atom at the transition structures by available density functional theory (DFT) results were about 2.0 for 2CpdIb,oxyl, whereas they were about 1.0 for 4CpdI and 2CpdIa. On the other hand, the spin density population on the carbon atom of alkyl radical were negative and positive in sign for 2CpdIb,oxyl and 4CpdI, respectively, in consistent with their spin structures. In order to elucidate possible reaction pathways by the cytochrome P450 compound I, relative stabilities between 4CpdI and 2CpdIb were examined on the basis of available DFT and beyond DFT results. The refined DFT results obtained by the beyond DFT elucidated one of the possible reaction pathways for hydrogen abstractions; 2CpdIa → 2Cpdb → 2CpdIb,oxyl → 2(TS) → (rebound). Implications of the computational results are also discussed in relation to water oxidation in artificial catalysts.
AB - Radical abstraction reactions by the cytochrome P450 compound I are investigated on the basis of the one quartet two doublet model consisted of three configurations; 4{2[↑• +Por]–[↑• 3Fe(IV)=O •↑]} (4CpdI; S = 3/2), 2{2[↓• +Por]–[↑• 3Fe(IV)=O •↑]} (2CpdIa; S = 1/2) and 2{1[Por(↑↓)]–2[↑• Fe(V)=O]} (2CpdIb; S = 1/2) where Por denotes porphyrin and axial cysteine anion (–SR) is neglected. The dπ-pπ bond of 2CpdIb was highly spin-polarized in the transition-state region of hydrogen abstraction reactions, providing the doublet configuration; 2{1[Por(↑↓)]–2[↑↑•• Fe(IV)–O •↓]} (2CpdIb,oxyl). The oxyl-radical character of 2CpdIb,oxyl plays an important role for hydrogen radical abstraction from alkanes. The spin populations on the iron atom at the transition structures by available density functional theory (DFT) results were about 2.0 for 2CpdIb,oxyl, whereas they were about 1.0 for 4CpdI and 2CpdIa. On the other hand, the spin density population on the carbon atom of alkyl radical were negative and positive in sign for 2CpdIb,oxyl and 4CpdI, respectively, in consistent with their spin structures. In order to elucidate possible reaction pathways by the cytochrome P450 compound I, relative stabilities between 4CpdI and 2CpdIb were examined on the basis of available DFT and beyond DFT results. The refined DFT results obtained by the beyond DFT elucidated one of the possible reaction pathways for hydrogen abstractions; 2CpdIa → 2Cpdb → 2CpdIb,oxyl → 2(TS) → (rebound). Implications of the computational results are also discussed in relation to water oxidation in artificial catalysts.
KW - Beyond DFT
KW - Broken Symmetry
KW - Compound I
KW - Diradical mechanism
KW - Fe(V)=O
KW - Hybrid DFT
KW - Hydroxylation
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U2 - 10.1016/j.jphotochem.2020.112902
DO - 10.1016/j.jphotochem.2020.112902
M3 - Article
AN - SCOPUS:85091217052
SN - 1010-6030
VL - 405
JO - Journal of Photochemistry and Photobiology A: Chemistry
JF - Journal of Photochemistry and Photobiology A: Chemistry
M1 - 112902
ER -