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  • Jian-Ren Shen
2020

Acidic pH-Induced Modification of Energy Transfer in Diatom Fucoxanthin Chlorophyll a/c-Binding Proteins

Nagao, R., Yokono, M., Ueno, Y., Shen, J-R. & Akimoto, S., Jun 18 2020, In : Journal of Physical Chemistry B Materials. 124, 24, p. 4919-4923 5 p.

Research output: Contribution to journalArticle

Adaptation of light-harvesting and energy-transfer processes of a diatom Chaetoceros gracilis to different light qualities

Akimoto, S., Ueno, Y., Yokono, M., Shen, J-R. & Nagao, R., Jan 22 2020, In : Photosynthesis research.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Adaptation of light-harvesting and energy-transfer processes of a diatom Phaeodactylum tricornutum to different light qualities

Oka, K., Ueno, Y., Yokono, M., Shen, J-R., Nagao, R. & Akimoto, S., Jan 21 2020, In : Photosynthesis research.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Changes in excitation relaxation of diatoms in response to fluctuating light, probed by fluorescence spectroscopies

Tanabe, M., Ueno, Y., Yokono, M., Shen, J. R., Nagao, R. & Akimoto, S., Feb 17 2020, In : Photosynthesis research.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Effects of CO2 and temperature on photosynthetic performance in the diatom Chaetoceros gracilis

Nagao, R., Ueno, Y., Akimoto, S. & Shen, J-R., Feb 29 2020, In : Photosynthesis research.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Excitation dynamics and relaxation in the major antenna of a marine green alga Bryopsis corticulans

Li, D-H., Wang, W., Zhou, C., Zhang, Y., Wang, P., Shen, J-R., Kuang, T. & Zhang, J-P., Mar 11 2020, In : Biochimica et Biophysica Acta - Bioenergetics. p. 148186

Research output: Contribution to journalArticle

Excitation-Energy Transfer and Quenching in Diatom PSI-FCPI upon P700 Cation Formation

Nagao, R., Yokono, M., Ueno, Y., Shen, J. R. & Akimoto, S., Feb 27 2020, In : Journal of Physical Chemistry B. 124, 8, p. 1481-1486 6 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

FTIR Microspectroscopic Analysis of the Water Oxidation Reaction in a Single Photosystem II Microcrystal

Kato, Y., Haniu, S., Nakajima, Y., Akita, F., Shen, J. R. & Noguchi, T., Jan 1 2020, (Accepted/In press) In : Journal of Physical Chemistry B.

Research output: Contribution to journalArticle

Function of PsbO-Asp158 in photosystem II: effects of mutation of this residue on the binding of PsbO and function of PSII in Thermosynechococcus vulcanus

Zhu, Q., Yang, Y., Xiao, Y., Wang, W., Kuang, T., Shen, J-R. & Han, G., Feb 4 2020, In : Photosynthesis research.

Research output: Contribution to journalArticle

Liquid-Liquid Phase Transition Drives Intra-chloroplast Cargo Sorting

Ouyang, M., Li, X., Zhang, J., Feng, P., Pu, H., Kong, L., Bai, Z., Rong, L., Xu, X., Chi, W., Wang, Q., Chen, F., Lu, C., Shen, J. & Zhang, L., Mar 19 2020, In : Cell. 180, 6, p. 1144-1159.e20

Research output: Contribution to journalArticle

1 Citation (Scopus)

pH-Induced Regulation of Excitation Energy Transfer in the Cyanobacterial Photosystem I Tetramer

Nagao, R., Yokono, M., Ueno, Y., Jiang, T. Y., Shen, J. R. & Akimoto, S., Mar 12 2020, In : Journal of Physical Chemistry B. 124, 10, p. 1949-1954 6 p.

Research output: Contribution to journalArticle

Role of PsbV-Tyr137 in photosystem II studied by site-directed mutagenesis in the thermophilic cyanobacterium Thermosynechococcus vulcanus

Xiao, Y., Zhu, Q., Yang, Y., Wang, W., Kuang, T., Shen, J-R. & Han, G., Apr 27 2020, In : Photosynthesis research.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Spectral tuning of light-harvesting complex II in the siphonous alga Bryopsis corticulans and its effect on energy transfer dynamics

Akhtar, P., Nowakowski, P. J., Wang, W., Do, T. N., Zhao, S., Siligardi, G., Garab, G., Shen, J-R., Tan, H-S. & Lambrev, P. H., Jul 1 2020, In : Biochimica et Biophysica Acta - Bioenergetics. 1861, 7, p. 148191

Research output: Contribution to journalArticle

Structural basis for assembly and function of a diatom photosystem I-light-harvesting supercomplex

Nagao, R., Kato, K., Ifuku, K., Suzuki, T., Kumazawa, M., Uchiyama, I., Kashino, Y., Dohmae, N., Akimoto, S., Shen, J. R., Miyazaki, N. & Akita, F., Dec 1 2020, In : Nature communications. 11, 1, 2481.

Research output: Contribution to journalArticle

Open Access

Structural basis for the adaptation and function of chlorophyll f in photosystem I

Kato, K., Shinoda, T., Nagao, R., Akimoto, S., Suzuki, T., Dohmae, N., Chen, M., Allakhverdiev, S. I., Shen, J. R., Akita, F., Miyazaki, N. & Tomo, T., Dec 1 2020, In : Nature communications. 11, 1, 238.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Structure of a cyanobacterial photosystem I surrounded by octadecameric IsiA antenna proteins

Akita, F., Nagao, R., Kato, K., Nakajima, Y., Yokono, M., Ueno, Y., Suzuki, T., Dohmae, N., Shen, J. R., Akimoto, S. & Miyazaki, N., Dec 1 2020, In : Communications Biology. 3, 1, 232.

Research output: Contribution to journalArticle

Open Access

Time-resolved studies of metalloproteins using X-ray free electron laser radiation at SACLA

Suga, M., Shimada, A., Akita, F., Shen, J-R., Tosha, T. & Sugimoto, H., Feb 2020, In : Biochimica et Biophysica Acta - General Subjects. 1864, 2, p. 129466

Research output: Contribution to journalArticle

Open Access

Water-oxidizing complex in Photosystem II: Its structure and relation to manganese-oxide based catalysts

Najafpour, M. M., Zaharieva, I., Zand, Z., Maedeh Hosseini, S., Kouzmanova, M., Hołyńska, M., Tranca, I., Larkum, A. W., Shen, J. R. & Allakhverdiev, S. I., May 1 2020, In : Coordination Chemistry Reviews. 409, 213183.

Research output: Contribution to journalReview article

2 Citations (Scopus)
2019

A manganese(II) phthalocyanine under water-oxidation reaction: New findings

Mousazade, Y., Najafpour, M. M., Bagheri, R., Jagličić, Z., Singh, J. P., Chae, K. H., Song, Z., Rodionova, M. V., Voloshin, R. A., Shen, J-R., Ramakrishna, S. & Allakhverdiev, S., Jan 1 2019, In : Dalton Transactions. 48, 32, p. 12147-12158 12 p.

Research output: Contribution to journalArticle

An alternative plant-like cyanobacterial ferredoxin with unprecedented structural and functional properties

Motomura, T., Zuccarello, L., Sétif, P., Boussac, A., Umena, Y., Lemaire, D., Tripathy, J. N., Sugiura, M., Hienerwadel, R., Shen, J. R. & Berthomieu, C., Nov 1 2019, In : Biochimica et Biophysica Acta - Bioenergetics. 1860, 11, 148084.

Research output: Contribution to journalArticle

An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser

Suga, M., Akita, F., Yamashita, K., Nakajima, Y., Ueno, G., Li, H., Yamane, T., Hirata, K., Umena, Y., Yonekura, S., Yu, L-J., Murakami, H., Nomura, T., Kimura, T., Kubo, M., Baba, S., Kumasaka, T., Tono, K., Yabashi, M., Isobe, H. & 4 others, Yamaguchi, K., Yamamoto, M., Ago, H. & Shen, J. R., Oct 18 2019, In : Science. 366, 6463, p. 334-338 5 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Blocking backward reaction on hydrogen evolution cocatalyst in a photosystem II hybrid Z-scheme water splitting system

Li, Z., Qi, Y., Wang, W., Li, D., Li, Z., Xiao, Y., Han, G., Shen, J-R. & Li, C., Apr 1 2019, In : Chinese Journal of Catalysis. p. 486-494 9 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Cobalt/Cobalt Oxide Surface for Water Oxidation

Feizi, H., Bagheri, R., Song, Z., Shen, J-R., Allakhverdiev, S. & Najafpour, M. M., Mar 18 2019, In : ACS Sustainable Chemistry and Engineering. 7, 6, p. 6093-6105 13 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Effects of excess light energy on excitation-energy dynamics in a pennate diatom Phaeodactylum tricornutum

Nagao, R., Ueno, Y., Yokono, M., Shen, J-R. & Akimoto, S., Jan 1 2019, In : Photosynthesis research.

Research output: Contribution to journalArticle

4 Citations (Scopus)
4 Citations (Scopus)

Influence of osmolytes on the stability of thylakoid-based dye-sensitized solar cells

Voloshin, R. A., Brady, N. G., Zharmukhamedov, S. K., Feyziyev, Y. M., Huseynova, I. M., Najafpour, M. M., Shen, J-R., Veziroglu, T. N., Bruce, B. D. & Allakhverdiev, S., Jan 1 2019, (Accepted/In press) In : International Journal of Energy Research.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Low-Energy Chlorophylls in Fucoxanthin Chlorophyll a/ c-Binding Protein Conduct Excitation Energy Transfer to Photosystem i in Diatoms

Nagao, R., Yokono, M., Ueno, Y., Shen, J. R. & Akimoto, S., Oct 1 2019, In : Journal of Physical Chemistry B. 123, 1, p. 66-70 5 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Novel mechanism of Cl-dependent proton dislocation in photosystem II (PSII): Hybrid Ab initio Quantum Mechanics=Molecular Mechanics Molecular Dynamics Simulation

Nakamura, A., Kang, J., Terada, R. I., Kino, H., Umena, Y., Kawakami, K., Shen, J-R., Kamiya, N. & Tateno, M., Jan 1 2019, In : Journal of the Physical Society of Japan. 88, 8, 084802.

Research output: Contribution to journalArticle

Open Access

Phospholipid distributions in purple phototrophic bacteria and LH1-RC core complexes

Nagatsuma, S., Gotou, K., Yamashita, T., Yu, L. J., Shen, J. R., Madigan, M. T., Kimura, Y. & Wang-Otomo, Z. Y., Jun 1 2019, In : Biochimica et Biophysica Acta - Bioenergetics. 1860, 6, p. 461-468 8 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

PH-Sensing Machinery of Excitation Energy Transfer in Diatom PSI-FCPI Complexes

Nagao, R., Yokono, M., Ueno, Y., Shen, J-R. & Akimoto, S., Jan 1 2019, In : Journal of Physical Chemistry Letters. p. 3531-3535 5 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Properties and structure of a low-potential, penta-heme cytochrome c 552 from a thermophilic purple sulfur photosynthetic bacterium Thermochromatium tepidum

Chen, J. H., Yu, L. J., Boussac, A., Wang-Otomo, Z. Y., Kuang, T. & Shen, J. R., Mar 1 2019, In : Photosynthesis research. 139, 1-3, p. 281-293 13 p.

Research output: Contribution to journalArticle

Proton-Coupled Electron Transfer of Plastoquinone Redox Reactions in Photosystem II: A Pump-Probe Ultraviolet Resonance Raman Study

Chen, J., Chen, J., Liu, Y., Zheng, Y., Zhu, Q., Han, G. & Shen, J-R., Jun 20 2019, In : Journal of Physical Chemistry Letters. 10, 12, p. 3240-3247 8 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Redox transients of P680 associated with the incremental chlorophyll-a fluorescence yield rises elicited by a series of saturating flashes in diuron-treated photosystem II core complex of Thermosynechococcus vulcanus

Sipka, G., Müller, P., Brettel, K., Magyar, M., Kovács, L., Zhu, Q., Xiao, Y., Han, G., Lambrev, P. H., Shen, J. R. & Garab, G., May 2019, In : Physiologia Plantarum. 166, 1, p. 22-32 11 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Spectral Properties and Excitation Relaxation of Novel Fucoxanthin Chlorophyll a/c-Binding Protein Complexes

Ueno, Y., Nagao, R., Shen, J. R. & Akimoto, S., Sep 5 2019, In : Journal of Physical Chemistry Letters. 10, 17, p. 5148-5152 5 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)
7 Citations (Scopus)

Structural basis for blue-green light harvesting and energy dissipation in diatoms

Wang, W., Yu, L-J., Xu, C., Tomizaki, T., Zhao, S., Umena, Y., Chen, X., Qin, X., Xin, Y., Suga, M., Han, G., Kuang, T. & Shen, J-R., Feb 8 2019, In : Science. 363, 6427

Research output: Contribution to journalArticle

29 Citations (Scopus)

Structural basis for energy harvesting and dissipation in a diatom PSII–FCPII supercomplex

Nagao, R., Kato, K., Suzuki, T., Ifuku, K., Uchiyama, I., Kashino, Y., Dohmae, N., Akimoto, S., Shen, J. R., Miyazaki, N. & Akita, F., Aug 1 2019, In : Nature Plants. 5, 8, p. 890-901 12 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Structural features of the diatom photosystem II-light-harvesting antenna complex

Wang, W., Zhao, S., Pi, X., Kuang, T., Sui, S-F. & Shen, J-R., Dec 18 2019, In : FEBS Journal.

Research output: Contribution to journalReview article

Structure of a C2S2M2N2-type PSII–LHCII supercomplex from the green alga Chlamydomonas reinhardtii

Shen, L., Huang, Z., Chang, S., Wang, W., Wang, J., Kuang, T., Han, G., Shen, J. R. & Zhang, X., Oct 15 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 42, p. 21246-21255 10 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Structure of a cyanobacterial photosystem I tetramer revealed by cryo-electron microscopy

Kato, K., Nagao, R., Jiang, T. Y., Ueno, Y., Yokono, M., Chan, S. K., Watanabe, M., Ikeuchi, M., Shen, J. R., Akimoto, S., Miyazaki, N. & Akita, F., Dec 1 2019, In : Nature communications. 10, 1, 4929.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Structure of a green algal photosystem I in complex with a large number of light-harvesting complex I subunits

Qin, X., Pi, X., Wang, W., Han, G., Zhu, L., Liu, M., Cheng, L., Shen, J-R., Kuang, T. & Sui, S. F., Mar 1 2019, In : Nature Plants. 5, 3, p. 263-272 10 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex

Pi, X., Zhao, S., Wang, W., Liu, D., Xu, C., Han, G., Kuang, T., Sui, S. F. & Shen, J-R., Aug 2 2019, In : Science (New York, N.Y.). 365, 6452

Research output: Contribution to journalArticle

13 Citations (Scopus)

Ultrafast Excitation Energy Dynamics in a Diatom Photosystem I-Antenna Complex: A Femtosecond Fluorescence Upconversion Study

Nagao, R., Kagatani, K., Ueno, Y., Shen, J-R. & Akimoto, S., Mar 28 2019, In : Journal of Physical Chemistry B. 123, 12, p. 2673-2678 6 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2018
10 Citations (Scopus)

An aluminum/cobalt/iron/nickel alloy as a precatalyst for water oxidation

Najafpour, M. M., Mehrabani, S., Bagheri, R., Song, Z., Shen, J-R. & Allakhverdiev, S., Jan 1 2018, (Accepted/In press) In : International Journal of Hydrogen Energy.

Research output: Contribution to journalArticle

20 Citations (Scopus)

A siphonous morphology affects light-harvesting modulation in the intertidal green macroalga Bryopsis corticulans (Ulvophyceae)

Giovagnetti, V., Han, G., Ware, M. A., Ungerer, P., Qin, X., Wang, W. D., Kuang, T., Shen, J-R. & Ruban, A. V., Feb 19 2018, (Accepted/In press) In : Planta. p. 1-14 14 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

A transparent electrode with water-oxidizing activity

Azadi, G., Bagheri, R., Bikas, R., Mousazade, Y., Cui, J., Song, Z., Kinzhybalo, V., Shen, J-R., Allakhverdiev, S. & Najafpour, M. M., Dec 20 2018, In : International Journal of Hydrogen Energy. 43, 51, p. 22896-22904 9 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)
9 Citations (Scopus)

Biohybrid solar cells: Fundamentals, progress, and challenges

Musazade, E., Voloshin, R., Brady, N., Mondal, J., Atashova, S., Zharmukhamedov, S. K., Huseynova, I., Ramakrishna, S., Najafpour, M. M., Shen, J-R., Bruce, B. D. & Allakhverdiev, S., Jun 1 2018, In : Journal of Photochemistry and Photobiology C: Photochemistry Reviews. 35, p. 134-156 23 p.

Research output: Contribution to journalReview article

17 Citations (Scopus)