• 1566 Citations
  • 14 h-Index
20052020

Research output per year

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Research Output

2020

Regulation of the Poly(A) Status of Mitochondrial mRNA by Poly(A)-Specific Ribonuclease Is Conserved among Land Plants

Kanazawa, M., Ikeda, Y., Nishihama, R., Yamaoka, S., Lee, N-H., Yamato, K. T., Kohchi, T. & Hirayama, T., Mar 1 2020, In : Plant & cell physiology. 61, 3, p. 470-480 11 p.

Research output: Contribution to journalArticle

Reprogramming of the Developmental Program of Rhus javanica During Initial Stage of Gall Induction by Schlechtendalia chinensis

Hirano, T., Kimura, S., Sakamoto, T., Okamoto, A., Nakayama, T., Matsuura, T., Ikeda, Y., Takeda, S., Suzuki, Y., Ohshima, I. & Sato, M. H., May 15 2020, In : Frontiers in Plant Science. 11, 471.

Research output: Contribution to journalArticle

Open Access
2019

Global transcriptome analyses reveal that infection with chrysanthemum stunt viroid (CSVd) affects gene expression profile of chrysanthemum plants, but the genes involved in plant hormone metabolism and signaling may not be silencing target of CSVd-siRNAs

Takino, H., Kitajima, S., Hirano, S., Oka, M., Matsuura, T., Ikeda, Y., Kojima, M., Takebayashi, Y., Sakakibara, H. & Mino, M., Jun 2019, In : Plant Gene. 18, 100181.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Overexpression of Prunus DAM6 inhibits growth, represses bud break competency of dormant buds and delays bud outgrowth in apple plants

Yamane, H., Wada, M., Honda, C., Matsuura, T., Ikeda, Y., Hirayama, T., Osako, Y., Gao-Takai, M., Kojima, M., Sakakibara, H. & Tao, R., Apr 2019, In : PloS one. 14, 4, e0214788.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Transcriptome analysis and identification of a transcriptional regulatory network in the response to H2O2

Hieno, A., Naznin, H. A., Inaba-Hasegawa, K., Yokogawa, T., Hayami, N., Nomoto, M., Tada, Y., Yokogawa, T., Higuchi-Takeuchi, M., Hanada, K., Matsui, M., Ikeda, Y., Hojo, Y., Hirayama, T., Kusunoki, K., Koyama, H., Mitsuda, N. & Yamamoto, Y. Y., Jul 2019, In : Plant physiology. 180, 3, p. 1629-1646 18 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)
2018

FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis

Frost, J. M., Kim, M. Y., Park, G. T., Hsieh, P. H., Nakamura, M., Lin, S. J. H., Yoo, H., Choi, J., Ikeda, Y., Kinoshita, T., Choi, Y., Zilberman, D. & Fischer, R. L., May 15 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 20, p. E4720-E4729

Research output: Contribution to journalArticle

16 Citations (Scopus)

Loss of CG Methylation in Marchantia polymorpha Causes Disorganization of Cell Division and Reveals Unique DNA Methylation Regulatory Mechanisms of Non-CG Methylation

Ikeda, Y., Nishihama, R., Yamaoka, S., Arteaga-Vazquez, M. A., Aguilar-Cruz, A., Grimanelli, D., Pogorelcnik, R., Martienssen, R. A., Yamato, K. T., Kohchi, T., Hirayama, T. & Mathieu, O., Dec 1 2018, In : Plant & cell physiology. 59, 12, p. 2421-2431 11 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2017

Arabidopsis proteins with a transposon-related domain act in gene silencing

Ikeda, Y., Pélissier, T., Bourguet, P., Becker, C., Pouch-Pélissier, M. N., Pogorelcnik, R., Weingartner, M., Weigel, D., Deragon, J. M. & Mathieu, O., Jan 1 2017, In : Nature Communications. 8, 15122.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Ectopic accumulation of linalool confers resistance to Xanthomonas citri subsp. citri in transgenic sweet orange plants

Shimada, T., Endo, T., Rodríguez, A., Fujii, H., Goto, S., Matsuura, T., Hojo, Y., Ikeda, Y., Mori, I., Fujikawa, T., Peña, L. & Omura, M., May 1 2017, In : Tree Physiology. 37, 5, p. 654-664 11 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Global profiling of phytohormone dynamics during combined drought and pathogen stress in Arabidopsis thaliana reveals ABA and JA as major regulators

Gupta, A., Hisano, H., Hojo, Y., Matsuura, T., Ikeda, Y., Mori, I. & Senthil-Kumar, M., Dec 1 2017, In : Scientific Reports. 7, 1, 4017.

Research output: Contribution to journalArticle

32 Citations (Scopus)

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

Bowman, J. L., Kohchi, T., Yamato, K. T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, S. S., Althoff, F., Araki, T., Arteaga-Vazquez, M. A., Balasubrmanian, S., Barry, K., Bauer, D., Boehm, C. R., Briginshaw, L. & 93 others, Caballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, K. M., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, A. E., Eklund, D. M., Florent, S. N., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A. J., Higo, A., Hirakawa, Y., Hundley, H. N., Ikeda, Y., Inoue, K., Inoue, S. I., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S. S., Lindquist, E., Lipzen, A. M., Lu, C. W., De Luna, E., Martienssen, R. A., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rövekamp, M., Sano, R., Sawa, S., Schmid, M. W., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, M., Takezawa, D., Tomogane, H., Tsuzuki, M., Ueda, T., Umeda, M., Ward, J. M., Watanabe, Y., Yazaki, K., Yokoyama, R., Yoshitake, Y., Yotsui, I., Zachgo, S. & Schmutz, J., Oct 5 2017, In : Cell. 171, 2, p. 287-304.e15

Research output: Contribution to journalArticle

274 Citations (Scopus)

Phytohormones in red seaweeds: A technical review of methods for analysis and a consideration of genomic data

Mori, I., Ikeda, Y., Matsuura, T., Hirayama, T. & Mikami, K., Apr 1 2017, In : Botanica Marina. 60, 2, p. 153-170 18 p.

Research output: Contribution to journalReview article

7 Citations (Scopus)

The SAL-PAP chloroplast retrograde pathway contributes to plant immunity by regulating glucosinolate pathway and phytohormone signaling

Ishiga, Y., Watanabe, M., Ishiga, T., Tohge, T., Matsuura, T., Ikeda, Y., Hoefgen, R., Fernie, A. R. & Mysore, K. S., Oct 1 2017, In : Molecular Plant-Microbe Interactions. 30, 10, p. 829-841 13 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)
2016

Comprehensive quantification and genome survey reveal the presence of novel phytohormone action modes in red seaweeds

Mikami, K., Mori, I., Matsuura, T., Ikeda, Y., Kojima, M., Sakakibara, H. & Hirayama, T., Aug 1 2016, In : Journal of Applied Phycology. 28, 4, p. 2539-2548 10 p., 016.

Research output: Contribution to journalArticle

20 Citations (Scopus)

Epigenome confrontation triggers immediate reprogramming of DNA methylation and transposon silencing in Arabidopsis thaliana F1 epihybrids

Rigal, M., Becker, C., Pélissier, T., Pogorelcnik, R., Devos, J., Ikeda, Y., Weigel, D. & Mathieu, O., Apr 5 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 14, p. E2083-E2092

Research output: Contribution to journalArticle

34 Citations (Scopus)

NADPH-dependent thioredoxin reductase C plays a role in nonhost disease resistance against Pseudomonas syringae pathogens by regulating chloroplast-generated reactive oxygen species

Ishiga, Y., Ishiga, T., Ikeda, Y., Matsuura, T. & Mysore, K. S., 2016, In : PeerJ. 2016, 4, e1938.

Research output: Contribution to journalArticle

10 Citations (Scopus)
2015

Light inhibition of shoot regeneration is regulated by endogenous abscisic acid level in calli derived from immature barley embryos

Rikiishi, K., Matsuura, T., Ikeda, Y. & Maekawa, M., Dec 1 2015, In : PLoS One. 10, 12, 0145242.

Research output: Contribution to journalArticle

4 Citations (Scopus)

The role of DNA methylation in transposable element silencing and genomic imprinting

Ikeda, Y. & Nishimura, T., Jan 1 2015, Nuclear Functions in Plant Transcription, Signaling and Development. Springer New York, p. 13-29 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

15 Citations (Scopus)
2012

Plant imprinted genes identified by genome-wide approaches and their regulatory mechanisms

Ikeda, Y., May 1 2012, In : Plant and Cell Physiology. 53, 5, p. 809-816 8 p.

Research output: Contribution to journalReview article

34 Citations (Scopus)
2011

HMG Domain containing SSRP1 is required for DNA demethylation and genomic imprinting in arabidopsis

Ikeda, Y., Kinoshita, Y., Susaki, D., Ikeda, Y., Iwano, M., Takayama, S., Higashiyama, T., Kakutani, T. & Kinoshita, T., Sep 13 2011, In : Developmental Cell. 21, 3, p. 589-596 8 p.

Research output: Contribution to journalArticle

59 Citations (Scopus)
2009

DNA demethylation: A lesson from the garden

Ikeda, Y. & Kinoshita, T., Jan 1 2009, In : Chromosoma. 118, 1, p. 37-41 5 p.

Research output: Contribution to journalShort survey

31 Citations (Scopus)
2008

Genomic imprinting: A balance between antagonistic roles of parental chromosomes

Kinoshita, T., Ikeda, Y. & Ishikawa, R., Dec 2008, In : Seminars in Cell and Developmental Biology. 19, 6, p. 574-579 6 p.

Research output: Contribution to journalReview article

27 Citations (Scopus)

MATERNALLY EXPRESSED PAB C-TERMINAL, a novel imprinted gene in Arabidopsis, encodes the conserved C-terminal domain of polyadenylate binding proteins

Tiwari, S., Schulz, R., Ikeda, Y., Dytham, L., Bravo, J., Mathers, L., Spielman, M., Guzmán, P., Oakey, R. J., Kinoshita, T. & Scotta, R. J., Sep 2008, In : Plant Cell. 20, 9, p. 2387-2398 12 p.

Research output: Contribution to journalArticle

81 Citations (Scopus)
2007

Erratum: Molecular basis of late-flowering phenotype caused by dominant epi-alleles of the FWA locus in arabidopsis (Plant and Cell Physiology 48, 2, (205-220))

Ikeda, Y., Kobayashi, Y., Yamaguchi, A., Abe, M. & Araki, T., Mar 1 2007, In : Plant and Cell Physiology. 48, 3, 1 p.

Research output: Contribution to journalComment/debate

Molecular basis of late-flowering phenotype caused by dominant epi-alleles of the FWA locus in Arabidopsis

Ikeda, Y., Kobayashi, Y., Yamaguchi, A., Abe, M. & Araki, T., Feb 1 2007, In : Plant and Cell Physiology. 48, 2, p. 205-220 16 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)
2005

FD, a bZIP protein mediating signals from the floral pathway integrator FT at the shoot apex

Abe, M., Kobayashi, Y., Yamamoto, S., Daimon, Y., Yamaguchi, A., Ikeda, Y., Ichinoki, H., Notaguchi, M., Goto, K. & Araki, T., Aug 12 2005, In : Science. 309, 5737, p. 1052-1056 5 p.

Research output: Contribution to journalArticle

839 Citations (Scopus)