Mayuko Hamada

  • 929 Citations
  • 10 h-Index
20032019
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Research Output 2003 2019

  • 929 Citations
  • 10 h-Index
  • 24 Article
  • 1 Comment/debate
  • 1 Letter
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Article
2019

A Nearly Complete Genome of Ciona intestinalis Type A (C. robusta) Reveals the Contribution of Inversion to Chromosomal Evolution in the Genus Ciona

Satou, Y., Nakamura, R., Yu, D., Yoshida, R., Hamada, M., Fujie, M., Hisata, K., Takeda, H. & Satoh, N., Nov 1 2019, In : Genome biology and evolution. 11, 11, p. 3144-3157 14 p.

Research output: Contribution to journalArticle

Open Access
Ciona intestinalis
genome
Genome
genome assembly
Genome Size
4 Citations (Scopus)

Medusozoan genomes inform the evolution of the jellyfish body plan

Khalturin, K., Shinzato, C., Khalturina, M., Hamada, M., Fujie, M., Koyanagi, R., Kanda, M., Goto, H., Anton-Erxleben, F., Toyokawa, M., Toshino, S. & Satoh, N., May 1 2019, In : Nature Ecology and Evolution. 3, 5, p. 811-822 12 p.

Research output: Contribution to journalArticle

Open Access
jellyfish
Scyphozoa
genome
gene
Anthozoa
2018
6 Citations (Scopus)

Metabolic co-dependence drives the evolutionarily ancient Hydra–Chlorella symbiosis

Hamada, M., Schröder, K., Bathia, J., Kürn, U., Fraune, S., Khalturina, M., Khalturin, K., Shinzato, C., Satoh, N. & Bosch, T. C. G., May 31 2018, In : eLife. 7, e35122.

Research output: Contribution to journalArticle

Phosphate Transport Proteins
Amino Acid Transport Systems
Chlorella
Glutamate-Ammonia Ligase
Gene encoding
2015
9 Citations (Scopus)

Evolution of the chordate regeneration blastema: Differential gene expression and conserved role of notch signaling during siphon regeneration in the ascidian Ciona

Hamada, M., Goricki, S., Byerly, M. S., Satoh, N. & Jeffery, W. R., Sep 15 2015, In : Developmental Biology. 405, 2, p. 304-315 12 p.

Research output: Contribution to journalArticle

Chordata
Urochordata
Regeneration
Gene Expression
Genes
14 Citations (Scopus)

Hox10-regulated endodermal cell migration is essential for development of the ascidian intestine

Kawai, N., Ogura, Y., Ikuta, T., Saiga, H., Hamada, M., Sakuma, T., Yamamoto, T., Satoh, N. & Sasakura, Y., Jul 1 2015, In : Developmental Biology. 403, 1, p. 43-56 14 p.

Research output: Contribution to journalArticle

Urochordata
Homeobox Genes
Intestines
Cell Movement
Nonvertebrate Chordata
2014
18 Citations (Scopus)

How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans

Bosch, T. C. G., Adamska, M., Augustin, R., Domazet-Loso, T., Foret, S., Fraune, S., Funayama, N., Grasis, J., Hamada, M., Hatta, M., Hobmayer, B., Kawai, K., Klimovich, A., Manuel, M., Shinzato, C., Technau, U., Yum, S. & Miller, D. J., Dec 1 2014, In : BioEssays. 36, 12, p. 1185-1194 10 p.

Research output: Contribution to journalArticle

Cnidaria
Life Cycle Stages
Tissue homeostasis
Life cycle
Animals
7 Citations (Scopus)

Transposon-mediated targeted and specific knockdown of maternally expressed transcripts in the ascidian Ciona intestinalis

Iitsuka, T., Mita, K., Hozumi, A., Hamada, M., Satoh, N. & Sasakura, Y., May 23 2014, In : Scientific Reports. 4, 5050.

Research output: Contribution to journalArticle

Ciona intestinalis
Urochordata
Stored Messenger RNA
Mothers
Untranslated Regions
2013
2 Citations (Scopus)

A methodical microarray design enables surveying of expression of a broader range of genes in Ciona intestinalis

Matsumae, H., Hamada, M., Fujie, M., Niimura, Y., Tanaka, H. & Kawashima, T., Apr 25 2013, In : Gene. 519, 1, p. 82-90 9 p.

Research output: Contribution to journalArticle

Ciona intestinalis
Genes
Gene Expression
Ovary
Databases
229 Citations (Scopus)

Draft assembly of the symbiodinium minutum nuclear genome reveals dinoflagellate gene structure

Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Seidi, A., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A. & 6 others, Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D. & Satoh, N., Aug 5 2013, In : Current Biology. 23, 15, p. 1399-1408 10 p.

Research output: Contribution to journalArticle

Dinoflagellida
Symbiodinium
nuclear genome
Genes
Genome
52 Citations (Scopus)

The complex NOD-like receptor repertoire of the coral acropora digitifera includes novel domain combinations

Hamada, M., Shoguchi, E., Shinzato, C., Kawashima, T., Miller, D. J. & Satoh, N., Jan 2013, In : Molecular Biology and Evolution. 30, 1, p. 167-176 10 p.

Research output: Contribution to journalArticle

AIDS-Related Complex
Anthozoa
Acropora
corals
coral
2012
3 Citations (Scopus)

Differential gene regulation by VIVand VV ions in the branchial sac, intestine, and blood cells of a vanadium-rich ascidian, Ciona intestinalis

Kume, S., Ueki, T., Matsuoka, H., Hamada, M., Satoh, N. & Michibata, H., Oct 2012, In : BioMetals. 25, 5, p. 1037-1050 14 p.

Research output: Contribution to journalArticle

Ciona intestinalis
Urochordata
vanadium
Vanadium
Ascidiacea
10 Citations (Scopus)

The repertoire of chemical defense genes in the coral acropora digitifera genome

Shinzato, C., Hamada, M., Shoguchi, E., Kawashima, T. & Satoh, N., Aug 2012, In : Zoological Science. 29, 8, p. 510-517 8 p.

Research output: Contribution to journalArticle

Acropora
corals
genome
genes
symbiosis
2011
23 Citations (Scopus)

Expression of neuropeptide- and hormone-encoding genes in the Ciona intestinalis larval brain

Hamada, M., Shimozono, N., Ohta, N., Satou, Y., Horie, T., Kawada, T., Satake, H., Sasakura, Y. & Satoh, N., Apr 15 2011, In : Developmental Biology. 352, 2, p. 202-214 13 p.

Research output: Contribution to journalArticle

Ciona intestinalis
Neuropeptides
Hormones
Brain
Genes
2 Citations (Scopus)

No chromosomal clustering of housekeeping genes in the marine chordate Ciona intestinalis

Shoguchi, E., Fujie, M. & Hamada, M., Sep 2011, In : Marine Genomics. 4, 3, p. 151-157 7 p.

Research output: Contribution to journalArticle

Ciona intestinalis
Chordata
Essential Genes
Cluster Analysis
gene
447 Citations (Scopus)

Using the Acropora digitifera genome to understand coral responses to environmental change

Shinzato, C., Shoguchi, E., Kawashima, T., Hamada, M., Hisata, K., Tanaka, M., Fujie, M., Fujiwara, M., Koyanagi, R., Ikuta, T., Fujiyama, A., Miller, D. J. & Satoh, N., Aug 18 2011, In : Nature. 476, 7360, p. 320-323 4 p.

Research output: Contribution to journalArticle

Anthozoa
Genome
Symbiosis
Sea Anemones
Coral Reefs
2010
4 Citations (Scopus)

Differential regional expression of genes in the developing brain of Ciona intestinalis embryos

Shimozono, N., Ohta, N., Satoh, N. & Hamada, M., Feb 2010, In : Zoological Science. 27, 2, p. 103-109 7 p.

Research output: Contribution to journalArticle

embryo (animal)
brain
gene expression
genes
transcriptomics
2009
3 Citations (Scopus)

Early zygotic expression of transcription factors and signal molecules in fully dissociated embryonic cells of ciona intestinalis: A microarray analysis

Noda, T., Hamada, M., Hamaguchi, M., Fujie, M. & Satoh, N., Sep 2009, In : Development Growth and Differentiation. 51, 7, p. 639-655 17 p.

Research output: Contribution to journalArticle

Ciona intestinalis
Microarray Analysis
Transcription Factors
Embryonic Structures
Genes
6 Citations (Scopus)

M-Ras evolved independently of R-Ras and its neural function is conserved between mammalian and ascidian, which lacks classical Ras

Keduka, E., Kaiho, A., Hamada, M., Watanabe-Takano, H., Takano, K., Ogasawara, M., Satou, Y., Satoh, N. & Endo, T., Jan 15 2009, In : Gene. 429, 1-2, p. 49-58 10 p.

Research output: Contribution to journalArticle

Urochordata
Ciona intestinalis
Notochord
ras Genes
Fibroblast Growth Factors
2008
15 Citations (Scopus)

Novel genes involved in canonical Wnt/β-catenin signaling pathway in early Ciona intestinalis embryos

Wada, S., Hamada, M., Kobayashi, K. & Satoh, N., May 2008, In : Development Growth and Differentiation. 50, 4, p. 215-227 13 p.

Research output: Contribution to journalArticle

Ciona intestinalis
Catenins
Wnt Signaling Pathway
Embryonic Structures
Genes
2007
9 Citations (Scopus)

Novel genes involved in Ciona intestinalis embryogenesis: Characterization of gene knockdown embryos

Hamada, M., Wada, S., Kobayashi, K. & Satoh, N., Jul 2007, In : Developmental Dynamics. 236, 7, p. 1820-1831 12 p.

Research output: Contribution to journalArticle

Ciona intestinalis
Gene Knockdown Techniques
Embryonic Development
Embryonic Structures
Genes
2006
30 Citations (Scopus)

A genomewide analysis of genes for the heat shock protein 70 chaperone system in the ascidian Ciona intestinalis

Wada, S., Hamada, M. & Satoh, N., Mar 2006, In : Cell Stress and Chaperones. 11, 1, p. 23-33 11 p.

Research output: Contribution to journalArticle

Ciona intestinalis
Urochordata
HSP70 Heat-Shock Proteins
Genes
Proteins
2005
18 Citations (Scopus)

Ci-Rga, a gene encoding an MtN3/saliva family transmembrane protein, is essential for tissue differentiation during embryogenesis of the ascidian Ciona intestinalis

Hamada, M., Wada, S., Kobayashi, K. & Satoh, N., Sep 2005, In : Differentiation. 73, 7, p. 364-376 13 p.

Research output: Contribution to journalArticle

RAG-1 Genes
Ciona intestinalis
Urochordata
Saliva
Transcriptional Activation
2003
11 Citations (Scopus)

Signals from primary mesenchyme cells regulate endoderm differentiation in the sea urchin embryo

Hamada, M. & Kiyomoto, M., Aug 2003, In : Development Growth and Differentiation. 45, 4, p. 339-350 12 p.

Research output: Contribution to journalArticle

Endoderm
Sea Urchins
Mesoderm
Embryonic Structures
Blastula