• 2408 Citations
  • 25 h-Index
19952020

Research output per year

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Research Output

  • 2408 Citations
  • 25 h-Index
  • 46 Article
  • 2 Review article
  • 1 Chapter
2020
Open Access
2017

EPro-ClearSee: A simple immunohistochemical method that does not require sectioning of plant samples

Nagaki, K., Yamaji, N. & Murata, M., Feb 8 2017, In : Scientific Reports. 7, 42203.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2016

Chromatin immunoprecipitation for detecting epigenetic marks on plant nucleosomes

Nagaki, K., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1469. p. 197-206 10 p. (Methods in Molecular Biology; vol. 1469).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)
2015

Epigenomic modification in rice controls meiotic recombination and segregation distortion

Habu, Y., Ando, T., Ito, S., Nagaki, K., Kishimoto, N., Taguchi-Shiobara, F., Numa, H., Yamaguchi, K., Shigenobu, S., Murata, M., Meshi, T. & Yano, M., Apr 1 2015, In : Molecular Breeding. 35, 4

Research output: Contribution to journalArticle

9 Citations (Scopus)

Modification of centromere structure: A promising approach for haploid line production in plant breeding

Tek, A. L., Stupar, R. M. & Nagaki, K., Jul 13 2015, In : Turkish Journal of Agriculture and Forestry. 39, 4, p. 557-562 6 p.

Research output: Contribution to journalReview article

4 Citations (Scopus)

Sunflower centromeres consist of a centromere-specific LINE and a chromosome-specific tandem repeat

Nagaki, K., Tanaka, K., Yamaji, N., Kobayashi, H. & Murata, M., Oct 31 2015, In : Frontiers in Plant Science. 6, OCTOBER, 912.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2014

Identification of the centromere-specific histone H3 variant in Lotus japonicus

Tek, A. L., Kashihara, K., Murata, M. & Nagaki, K., Mar 15 2014, In : Gene. 538, 1, p. 8-11 4 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2013

Generation of an artificial ring chromosome in Arabidopsis by Cre/LoxP-mediated recombination

Murata, M., Shibata, F., Hironaka, A., Kashihara, K., Fujimoto, S., Yokota, E. & Nagaki, K., May 1 2013, In : Plant Journal. 74, 3, p. 363-371 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Identification and characterization of functional centromeres of the common bean

Iwata, A., Tek, A. L., Richard, M. M. S., Abernathy, B., Fonsêca, A., Schmutz, J., Chen, N. W. G., Thareau, V., Magdelenat, G., Li, Y., Murata, M., Pedrosa-Harand, A., Geffroy, V., Nagaki, K. & Jackson, S. A., Oct 1 2013, In : Plant Journal. 76, 1, p. 47-60 14 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Tobacco karyotyping by accurate centromere identification and novel repetitive DNA localization

Shibata, F., Nagaki, K., Yokota, E. & Murata, M., Jul 1 2013, In : Chromosome Research. 21, 4, p. 375-381 7 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)
2012

Chromosome Dynamics Visualized with an Anti-Centromeric Histone H3 Antibody in Allium

Nagaki, K., Yamamoto, M., Yamaji, N., Mukai, Y. & Murata, M., Dec 7 2012, In : PloS one. 7, 12, e51315.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Isolation of centromeric-tandem repetitive DNA sequences by chromatin affinity purification using a HaloTag7-fused centromere-specific histone H3 in tobacco

Nagaki, K., Shibata, F., Kanatani, A., Kashihara, K. & Murata, M., Apr 1 2012, In : Plant Cell Reports. 31, 4, p. 771-779 9 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Nondisjunction in favor of a chromosome: The mechanism of rye B chromosome drive during pollen mitosis

Banaei-Moghaddam, A. M., Schubert, V., Kumke, K., Wei, O., Klemme, S., Nagaki, K., Macas, J., González-Sánchez, M., Heredia, V., Gómez-Revilla, D., González-García, M., Vega, J. M., Puertas, M. J. & Houben, A., Oct 1 2012, In : Plant Cell. 24, 10, p. 4124-4134 11 p.

Research output: Contribution to journalArticle

42 Citations (Scopus)
2011

CENH3 distribution and differential chromatin modifications during pollen development in rye (Secale cereale L.)

Houben, A., Kumke, K., Nagaki, K. & Hause, G., 2011, In : Chromosome Research. 19, 4, p. 471-480 10 p.

Research output: Contribution to journalArticle

28 Citations (Scopus)

Coexistence of NtCENH3 and two retrotransposons in tobacco centromeres

Nagaki, K., Shibata, F., Suzuki, G., Kanatani, A., Ozaki, S., Hironaka, A., Kashihara, K. & Murata, M., Jul 1 2011, In : Chromosome Research. 19, 5, p. 591-605 15 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Functional centromeres in Astragalus sinicus include a compact centromere-specific histone H3 and a 20-bp tandem repeat

Tek, A. L., Kashihara, K., Murata, M. & Nagaki, K., Nov 1 2011, In : Chromosome Research. 19, 8, p. 969-978 10 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Holocentric chromosomes of luzula elegans are characterized by a longitudinal centromere groove, chromosome bending, and a terminal nucleolus organizer region

Heckmann, S., Schroeder-Reiter, E., Kumke, K., Ma, L., Nagaki, K., Murata, M., Wanner, G. & Houben, A., Jun 1 2011, In : Cytogenetic and Genome Research. 134, 3, p. 220-228 9 p.

Research output: Contribution to journalArticle

39 Citations (Scopus)

Meiosis-Specific loading of the Centromere-Specific histone CENH3 in Arabidopsis thaliana

Ravi, M., Shibata, F., Ramahi, J. S., Nagaki, K., Chen, C., Murata, M. & Chan, S. W. L., Jun 1 2011, In : PLoS genetics. 7, 6, e1002121.

Research output: Contribution to journalArticle

70 Citations (Scopus)

Stability of monocentric and dicentric ring minichromosomes in Arabidopsis

Yokota, E., Shibata, F., Nagaki, K. & Murata, M., Nov 1 2011, In : Chromosome Research. 19, 8, p. 999-1012 14 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)
2010

Centromere targeting of alien CENH3s in arabidopsis and tobacco cells

Nagaki, K., Terada, K., Wakimoto, M., Kashihara, K. & Murata, M., Feb 1 2010, In : Chromosome Research. 18, 2, p. 203-211 9 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Functional centromeres in soybean include two distinct tandem repeats and a retrotransposon

Tek, A. L., Kashihara, K., Murata, M. & Nagaki, K., Apr 1 2010, In : Chromosome Research. 18, 3, p. 337-347 11 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Minichromosome stability induced by partial genome duplication in Arabidopsis thaliana

Yokota, E., Nagaki, K. & Murata, M., Aug 1 2010, In : Chromosoma. 119, 4, p. 361-369 9 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2009

A centromeric DNA sequence colocalized with a centromere-specific histone H3 in tobacco

Nagaki, K., Kashihara, K. & Murata, M., Jan 1 2009, In : Chromosoma. 118, 2, p. 249-257 9 p.

Research output: Contribution to journalArticle

38 Citations (Scopus)

Characterization of the two centromeric proteins CENP-C and MIS12 in Nicotiana species

Nagaki, K., Kashihara, K. & Murata, M., Aug 1 2009, In : Chromosome Research. 17, 6, p. 719-726 8 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Structure and evolution of plant centromeres.

Nagaki, K., Walling, J., Hirsch, C., Jiang, J. & Murata, M., 2009, In : Progress in molecular and subcellular biology. 48, p. 153-179 27 p.

Research output: Contribution to journalReview article

12 Citations (Scopus)
2007

CENH3 interacts with the centromeric retrotransposon cereba and GC-rich satellites and locates to centromeric substructures in barley

Houben, A., Schroeder-Reiter, E., Nagaki, K., Nasuda, S., Wanner, G., Murata, M. & Endo, T. R., Jun 1 2007, In : Chromosoma. 116, 3, p. 275-283 9 p.

Research output: Contribution to journalArticle

70 Citations (Scopus)
2006

Precise centromere mapping using a combination of repeat junction markers and chromatin immunoprecipitation-polymerase chain reaction

Luce, A. C., Sharma, A., Mollere, O. S. B., Wolfgruber, T. K., Nagaki, K., Jiang, J., Presting, G. G. & Dawe, R. K., Nov 6 2006, In : Genetics. 174, 2, p. 1057-1061 5 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)
2005

Characterization of CENH3 and centromere-associated DNA sequences in sugarcane

Nagaki, K. & Murata, M., Jan 1 2005, In : Chromosome Research. 13, 2, p. 195-203 9 p.

Research output: Contribution to journalArticle

65 Citations (Scopus)

Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice

Nagaki, K., Neumann, P., Zhang, D., Ouyang, S., Buell, C. R., Cheng, Z. & Jiang, J., Apr 1 2005, In : Molecular Biology and Evolution. 22, 4, p. 845-855 11 p.

Research output: Contribution to journalArticle

75 Citations (Scopus)

Transcription and histone modifications in the recombination-free region spanning a rice centromere

Yan, H., Jin, W., Nagaki, K., Tian, S., Ouyang, S., Buell, C. R., Talbert, P. B., Henikoff, S. & Jiang, J., Dec 1 2005, In : Plant Cell. 17, 12, p. 3227-3238 12 p.

Research output: Contribution to journalArticle

90 Citations (Scopus)

Visualization of diffuse centromeres with centromere-specific histone H3 in the holocentric plant Luzula nivea

Nagaki, K., Kashihara, K. & Murata, M., Dec 1 2005, In : Plant Cell. 17, 7, p. 1886-1893 8 p.

Research output: Contribution to journalArticle

76 Citations (Scopus)
2004

Maize centromeres: Organization and functional adaptation in the genetic background of oat

Jin, W., Melo, J. R., Nagaki, K., Talbert, P. B., Henikoff, S., Dawe, R. K. & Jiang, J., Mar 1 2004, In : Plant Cell. 16, 3, p. 571-581 11 p.

Research output: Contribution to journalArticle

192 Citations (Scopus)

Sequencing of a rice centromere uncovers active genes

Nagaki, K., Cheng, Z., Ouyang, S., Talbert, P. B., Kim, M., Jones, K. M., Henikoff, S., Buell, C. R. & Jiang, J., Feb 1 2004, In : Nature Genetics. 36, 2, p. 138-145 8 p.

Research output: Contribution to journalArticle

392 Citations (Scopus)
2003

Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres

Nagaki, K., Talbert, P. B., Zhong, C. X., Dawe, R. K., Henikoff, S. & Jiang, J., Mar 1 2003, In : Genetics. 163, 3, p. 1221-1225 5 p.

Research output: Contribution to journalArticle

179 Citations (Scopus)

Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres

Nagaki, K., Song, J., Stupar, R. M., Parokonny, A. S., Yuan, Q., Ouyang, S., Liu, J., Hsiao, J., Jones, K. M., Kelly Dawe, R., Robin Buellt, C. & Jiang, J., Feb 1 2003, In : Genetics. 163, 2, p. 759-770 12 p.

Research output: Contribution to journalArticle

136 Citations (Scopus)
2002

Centromeric retroelements and satellites interact with maize kinetochore protein CENH3

Xiaoyan Zhong, C., Marshall, J. B., Topp, C., Mroczek, R., Kato, A., Nagaki, K., Birchler, J. A., Jiang, J. & Dawe, R. K., Nov 1 2002, In : Plant Cell. 14, 11, p. 2825-2836 12 p.

Research output: Contribution to journalArticle

271 Citations (Scopus)

Tetrad-FISH analysis reveals recombination suppression by interstitial heterochromatin sequences in rye (Secale cereale)

Kagawa, N., Nagaki, K. & Tsujimoto, H., Apr 6 2002, In : Molecular Genetics and Genomics. 267, 1, p. 10-15 6 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

A tandem repetitive sequence located in the centromeric region of common wheat (Triticum aestivum) chromosomes

Kishii, M., Nagaki, K. & Tsujimoto, H., Jul 7 2001, In : Chromosome Research. 9, 5, p. 417-428 12 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)
2000

Development of an efficient maintenance and screening system for large-insert genomic DNA libraries of hexaploid wheat in a transformation-competent artificial chromosome (TAC) vector

Liu, Y. G., Nagaki, K., Fujita, M., Kawaura, K., Uozumi, M. & Ogihara, Y., Oct 2 2000, In : Plant Journal. 23, 5, p. 687-695 9 p.

Research output: Contribution to journalArticle

64 Citations (Scopus)
1999

A novel repetitive sequence, termed the JNK repeat family, located on an extra heterochromatic region of chromosome 2R of Japanese rye

Nagaki, K., Tsujimoto, H. & Sasakuma, T., Jan 1 1999, In : Chromosome Research. 7, 2, p. 95-102 8 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

De novo synthesis of telomere sequences at the healed breakpoints of wheat deletion chromosomes

Tsujimoto, H., Usami, N., Hasegawa, K., Yamada, T., Nagaki, K. & Sasakuma, T., Dec 1 1999, In : Molecular and General Genetics. 262, 4-5, p. 851-856 6 p.

Research output: Contribution to journalArticle

40 Citations (Scopus)

Exclusive localization of tandem repetitive sequences in sulbtelomeric heterochromatin regions of Leymus racemosus (Poaceae, Triticeae)

Kishii, M., Nagaki, K., Tsujimoto, H. & Sasakuma, T., Nov 30 1999, In : Chromosome Research. 7, 7, p. 519-529 11 p.

Research output: Contribution to journalArticle

30 Citations (Scopus)

Tandem repetitive Afa-family sequences from Leymus racemosus and Psathyrostachys juncea (Poaceae)

Nagaki, K., Kishii, M., Tsujimoto, H. & Sasakuma, T., Dec 1 1999, In : Genome. 42, 6, p. 1258-1260 3 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)
1998

A novel repetitive sequence of sugar cane, SCEN family, locating on centromeric regions

Nagaki, K., Tsujimoto, H. & Sasakuma, T., Jul 29 1998, In : Chromosome Research. 6, 4, p. 295-302 8 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)

Dynamics of tandem repetitive Afa-family sequences in Triticeae, wheat- related species

Nagaki, K., Tsujimoto, H. & Sasakuma, T., Aug 24 1998, In : Journal of Molecular Evolution. 47, 2, p. 183-189 7 p.

Research output: Contribution to journalArticle

28 Citations (Scopus)

H genome specific repetitive sequence, pEt2, of Elymus trachycaulus in part of afa family of triticeae

Nagaki, K., Tsujimoto, H. & Sasakuma, T., Jan 1 1998, In : Genome. 41, 1, p. 134-136 3 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)
1997

Identification of individual barley chromosomes based on repetitive sequences: Conservative distribution of Afa-family repetitive sequences on the chromosomes of barley and wheat

Tsujimoto, H., Mukai, Y., Akagawa, K., Nagaki, K., Fujigaki, J., Yamamoto, M. & Sasakuma, T., Oct 1 1997, In : Genes and Genetic Systems. 72, 5, p. 303-309 7 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)
1995

Molecular characterization of a tandem repeat, Afa family, and its distribution among Triticeae

Nagaki, K., Tsujimoto, H., Isono, K. & Sasakuma, T., Jan 1 1995, In : Genome. 38, 3, p. 479-486 8 p.

Research output: Contribution to journalArticle

103 Citations (Scopus)