• 2360 Citations
  • 25 h-Index
19952017
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Research Output 1995 2017

  • 2360 Citations
  • 25 h-Index
  • 47 Article
  • 1 Chapter
2017
5 Citations (Scopus)

EPro-ClearSee: A simple immunohistochemical method that does not require sectioning of plant samples

Nagaki, K., Yamaji, N. & Murata, M., Feb 8 2017, In : Scientific Reports. 7, 42203.

Research output: Contribution to journalArticle

epigenetics
histones
sampling
cells
methodology
2016

Chromatin immunoprecipitation for detecting epigenetic marks on plant nucleosomes

Nagaki, K., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1469. p. 197-206 10 p. (Methods in Molecular Biology; vol. 1469).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nucleosomes
Chromatin Immunoprecipitation
Epigenomics
Histones
Centromere
2015
9 Citations (Scopus)

Epigenomic modification in rice controls meiotic recombination and segregation distortion

Habu, Y., Ando, T., Ito, S., Nagaki, K., Kishimoto, N., Taguchi-Shiobara, F., Numa, H., Yamaguchi, K., Shigenobu, S., Murata, M., Meshi, T. & Yano, M., Apr 1 2015, In : Molecular Breeding. 35, 4

Research output: Contribution to journalArticle

segregation distortion
Epigenomics
epigenetics
Genetic Recombination
chromatin
4 Citations (Scopus)

Modification of centromere structure: A promising approach for haploid line production in plant breeding

Tek, A. L., Stupar, R. M. & Nagaki, K., Jul 13 2015, In : Turkish Journal of Agriculture and Forestry. 39, 4, p. 557-562 6 p.

Research output: Contribution to journalArticle

plant breeding
Centromere
Haploidy
centromeres
haploidy
4 Citations (Scopus)

Sunflower centromeres consist of a centromere-specific LINE and a chromosome-specific tandem repeat

Nagaki, K., Tanaka, K., Yamaji, N., Kobayashi, H. & Murata, M., Oct 31 2015, In : Frontiers in Plant Science. 6, OCTOBER, 912.

Research output: Contribution to journalArticle

tandem repeat sequences
centromeres
Helianthus annuus
chromosomes
nucleotide sequences
2014
5 Citations (Scopus)

Identification of the centromere-specific histone H3 variant in Lotus japonicus

Tek, A. L., Kashihara, K., Murata, M. & Nagaki, K., Mar 15 2014, In : Gene. 538, 1, p. 8-11 4 p.

Research output: Contribution to journalArticle

Centromere
Histones
Fabaceae
Chromosomes
Agrobacterium
2013
12 Citations (Scopus)

Generation of an artificial ring chromosome in Arabidopsis by Cre/LoxP-mediated recombination

Murata, M., Shibata, F., Hironaka, A., Kashihara, K., Fujimoto, S., Yokota, E. & Nagaki, K., May 2013, In : Plant Journal. 74, 3, p. 363-371 9 p.

Research output: Contribution to journalArticle

Artificial Chromosomes
Ring Chromosomes
Arabidopsis
Genetic Recombination
Plant Chromosomes
31 Citations (Scopus)

Identification and characterization of functional centromeres of the common bean

Iwata, A., Tek, A. L., Richard, M. M. S., Abernathy, B., Fonsêca, A., Schmutz, J., Chen, N. W. G., Thareau, V., Magdelenat, G., Li, Y., Murata, M., Pedrosa-Harand, A., Geffroy, V., Nagaki, K. & Jackson, S. A., Oct 2013, In : Plant Journal. 76, 1, p. 47-60 14 p.

Research output: Contribution to journalArticle

Centromere
centromeres
beans
Chromatin Immunoprecipitation
Genome
8 Citations (Scopus)

Tobacco karyotyping by accurate centromere identification and novel repetitive DNA localization

Shibata, F., Nagaki, K., Yokota, E. & Murata, M., Jul 2013, In : Chromosome Research. 21, 4, p. 375-381 7 p.

Research output: Contribution to journalArticle

Karyotyping
Centromere
Tobacco
DNA
Fluorescence In Situ Hybridization
2012
16 Citations (Scopus)

Chromosome Dynamics Visualized with an Anti-Centromeric Histone H3 Antibody in Allium

Nagaki, K., Yamamoto, M., Yamaji, N., Mukai, Y. & Murata, M., Dec 7 2012, In : PLoS One. 7, 12, e51315.

Research output: Contribution to journalArticle

Allium
Onions
Chromosomes
histones
Japanese bunching onions
9 Citations (Scopus)

Isolation of centromeric-tandem repetitive DNA sequences by chromatin affinity purification using a HaloTag7-fused centromere-specific histone H3 in tobacco

Nagaki, K., Shibata, F., Kanatani, A., Kashihara, K. & Murata, M., Apr 2012, In : Plant Cell Reports. 31, 4, p. 771-779 9 p.

Research output: Contribution to journalArticle

centromeres
histones
chromatin
tobacco
nucleotide sequences
42 Citations (Scopus)

Nondisjunction in favor of a chromosome: The mechanism of rye B chromosome drive during pollen mitosis

Banaei-Moghaddam, A. M., Schubert, V., Kumke, K., Wei, O., Klemme, S., Nagaki, K., Macas, J., González-Sánchez, M., Heredia, V., Gómez-Revilla, D., González-García, M., Vega, J. M., Puertas, M. J. & Houben, A., Oct 2012, In : Plant Cell. 24, 10, p. 4124-4134 11 p.

Research output: Contribution to journalArticle

Chromosomes, Human, 4-5
Centromere
centromeres
Pollen
Mitosis
2011
28 Citations (Scopus)

CENH3 distribution and differential chromatin modifications during pollen development in rye (Secale cereale L.)

Houben, A., Kumke, K., Nagaki, K. & Hause, G., 2011, In : Chromosome Research. 19, 4, p. 471-480 10 p.

Research output: Contribution to journalArticle

Pollen
Chromatin
Angiosperms
Arabidopsis
Histones
11 Citations (Scopus)

Coexistence of NtCENH3 and two retrotransposons in tobacco centromeres

Nagaki, K., Shibata, F., Suzuki, G., Kanatani, A., Ozaki, S., Hironaka, A., Kashihara, K. & Murata, M., Jul 2011, In : Chromosome Research. 19, 5, p. 591-605 15 p.

Research output: Contribution to journalArticle

Retroelements
Centromere
Tobacco
Bacterial Artificial Chromosomes
Fluorescence In Situ Hybridization
14 Citations (Scopus)

Functional centromeres in Astragalus sinicus include a compact centromere-specific histone H3 and a 20-bp tandem repeat

Tek, A. L., Kashihara, K., Murata, M. & Nagaki, K., Nov 2011, In : Chromosome Research. 19, 8, p. 969-978 10 p.

Research output: Contribution to journalArticle

Tandem Repeat Sequences
Centromere
Histones
Eukaryota
Fabaceae
37 Citations (Scopus)

Holocentric chromosomes of luzula elegans are characterized by a longitudinal centromere groove, chromosome bending, and a terminal nucleolus organizer region

Heckmann, S., Schroeder-Reiter, E., Kumke, K., Ma, L., Nagaki, K., Murata, M., Wanner, G. & Houben, A., Jun 2011, In : Cytogenetic and Genome Research. 134, 3, p. 220-228 9 p.

Research output: Contribution to journalArticle

Nucleolus Organizer Region
Centromere
Microtubules
Chromosomes
Ribosomal DNA
65 Citations (Scopus)

Meiosis-Specific loading of the Centromere-Specific histone CENH3 in Arabidopsis thaliana

Ravi, M., Shibata, F., Ramahi, J. S., Nagaki, K., Chen, C., Murata, M. & Chan, S. W. L., Jun 2011, In : PLoS Genetics. 7, 6, e1002121.

Research output: Contribution to journalArticle

Centromere
Meiosis
centromeres
Arabidopsis
histones
6 Citations (Scopus)

Stability of monocentric and dicentric ring minichromosomes in Arabidopsis

Yokota, E., Shibata, F., Nagaki, K. & Murata, M., Nov 2011, In : Chromosome Research. 19, 8, p. 999-1012 14 p.

Research output: Contribution to journalArticle

Centromere
Arabidopsis
Mitosis
Chromosomes
Telomere
2010
11 Citations (Scopus)

Centromere targeting of alien CENH3s in arabidopsis and tobacco cells

Nagaki, K., Terada, K., Wakimoto, M., Kashihara, K. & Murata, M., Feb 2010, In : Chromosome Research. 18, 2, p. 203-211 9 p.

Research output: Contribution to journalArticle

Centromere
Arabidopsis
Histones
Tobacco
Cultured Cells
33 Citations (Scopus)

Functional centromeres in soybean include two distinct tandem repeats and a retrotransposon

Tek, A. L., Kashihara, K., Murata, M. & Nagaki, K., Apr 2010, In : Chromosome Research. 18, 3, p. 337-347 11 p.

Research output: Contribution to journalArticle

Retroelements
Tandem Repeat Sequences
Centromere
Soybeans
Kinetochores
5 Citations (Scopus)

Minichromosome stability induced by partial genome duplication in Arabidopsis thaliana

Yokota, E., Nagaki, K. & Murata, M., Aug 2010, In : Chromosoma. 119, 4, p. 361-369 9 p.

Research output: Contribution to journalArticle

Karyotype
Arabidopsis
Chromosomes, Human, Pair 1
Genome
Chromosomes
2009
37 Citations (Scopus)

A centromeric DNA sequence colocalized with a centromere-specific histone H3 in tobacco

Nagaki, K., Kashihara, K. & Murata, M., 2009, In : Chromosoma. 118, 2, p. 249-257 9 p.

Research output: Contribution to journalArticle

Centromere
Histones
Tobacco
Complementary DNA
Antibodies
5 Citations (Scopus)

Characterization of the two centromeric proteins CENP-C and MIS12 in Nicotiana species

Nagaki, K., Kashihara, K. & Murata, M., Aug 2009, In : Chromosome Research. 17, 6, p. 719-726 8 p.

Research output: Contribution to journalArticle

Protein C
Tobacco
Centromere
Kinetochores
Tetraploidy
12 Citations (Scopus)

Structure and evolution of plant centromeres.

Nagaki, K., Walling, J., Hirsch, C., Jiang, J. & Murata, M., 2009, In : Progress in molecular and subcellular biology. 48, p. 153-179 27 p.

Research output: Contribution to journalArticle

Plant Structures
Centromere
Poaceae
Arabidopsis
Yeasts
2007
68 Citations (Scopus)

CENH3 interacts with the centromeric retrotransposon cereba and GC-rich satellites and locates to centromeric substructures in barley

Houben, A., Schroeder-Reiter, E., Nagaki, K., Nasuda, S., Wanner, G., Murata, M. & Endo, T. R., Jun 2007, In : Chromosoma. 116, 3, p. 275-283 9 p.

Research output: Contribution to journalArticle

Retroelements
Centromere
Hordeum
Histones
Kinetochores
2006
24 Citations (Scopus)

Precise centromere mapping using a combination of repeat junction markers and chromatin immunoprecipitation-polymerase chain reaction

Luce, A. C., Sharma, A., Mollere, O. S. B., Wolfgruber, T. K., Nagaki, K., Jiang, J., Presting, G. G. & Dawe, R. K., 2006, In : Genetics. 174, 2, p. 1057-1061 5 p.

Research output: Contribution to journalArticle

Centromere
Chromatin Immunoprecipitation
Polymerase Chain Reaction
Heterochromatin
Zea mays
2005
64 Citations (Scopus)

Characterization of CENH3 and centromere-associated DNA sequences in sugarcane

Nagaki, K. & Murata, M., Jan 2005, In : Chromosome Research. 13, 2, p. 195-203 9 p.

Research output: Contribution to journalArticle

Saccharum
Centromere
Histones
Retroelements
Expressed Sequence Tags
74 Citations (Scopus)

Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice

Nagaki, K., Neumann, P., Zhang, D., Ouyang, S., Buell, C. R., Cheng, Z. & Jiang, J., Apr 2005, In : Molecular Biology and Evolution. 22, 4, p. 845-855 11 p.

Research output: Contribution to journalArticle

Retroelements
retrotransposons
rice
divergence
Satellite DNA
89 Citations (Scopus)

Transcription and histone modifications in the recombination-free region spanning a rice centromere

Yan, H., Jin, W., Nagaki, K., Tian, S., Ouyang, S., Buell, C. R., Talbert, P. B., Henikoff, S. & Jiang, J., 2005, In : Plant Cell. 17, 12, p. 3227-3238 12 p.

Research output: Contribution to journalArticle

Histone Code
Centromere
centromeres
Transcription
histones
73 Citations (Scopus)

Visualization of diffuse centromeres with centromere-specific histone H3 in the holocentric plant Luzula nivea

Nagaki, K., Kashihara, K. & Murata, M., 2005, In : Plant Cell. 17, 7, p. 1886-1893 8 p.

Research output: Contribution to journalArticle

Luzula
Centromere
centromeres
Chromosomes
histones
2004
191 Citations (Scopus)

Maize centromeres: Organization and functional adaptation in the genetic background of oat

Jin, W., Melo, J. R., Nagaki, K., Talbert, P. B., Henikoff, S., Dawe, R. K. & Jiang, J., Mar 2004, In : Plant Cell. 16, 3, p. 571-581 11 p.

Research output: Contribution to journalArticle

Centromere
centromeres
Histones
genetic background
Zea mays
386 Citations (Scopus)

Sequencing of a rice centromere uncovers active genes

Nagaki, K., Cheng, Z., Ouyang, S., Talbert, P. B., Kim, M., Jones, K. M., Henikoff, S., Buell, C. R. & Jiang, J., Feb 2004, In : Nature Genetics. 36, 2, p. 138-145 8 p.

Research output: Contribution to journalArticle

Centromere
Genes
Histones
Satellite DNA
Chromosomes, Human, Pair 8
2003
172 Citations (Scopus)

Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres

Nagaki, K., Talbert, P. B., Zhong, C. X., Dawe, R. K., Henikoff, S. & Jiang, J., Mar 1 2003, In : Genetics. 163, 3, p. 1221-1225 5 p.

Research output: Contribution to journalArticle

Centromere
Chromatin Immunoprecipitation
Arabidopsis
DNA
Kinetochores
134 Citations (Scopus)

Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres

Nagaki, K., Song, J., Stupar, R. M., Parokonny, A. S., Yuan, Q., Ouyang, S., Liu, J., Hsiao, J., Jones, K. M., Kelly Dawe, R., Robin Buellt, C. & Jiang, J., Feb 1 2003, In : Genetics. 163, 2, p. 759-770 12 p.

Research output: Contribution to journalArticle

Retroelements
Centromere
Zea mays
DNA
Terminal Repeat Sequences
2002
268 Citations (Scopus)

Centromeric retroelements and satellites interact with maize kinetochore protein CENH3

Xiaoyan Zhong, C., Marshall, J. B., Topp, C., Mroczek, R., Kato, A., Nagaki, K., Birchler, J. A., Jiang, J. & Dawe, R. K., Nov 1 2002, In : Plant Cell. 14, 11, p. 2825-2836 12 p.

Research output: Contribution to journalArticle

Kinetochores
kinetochores
Retroelements
retrotransposons
histones
8 Citations (Scopus)

Tetrad-FISH analysis reveals recombination suppression by interstitial heterochromatin sequences in rye (Secale cereale)

Kagawa, N., Nagaki, K. & Tsujimoto, H., 2002, In : Molecular Genetics and Genomics. 267, 1, p. 10-15 6 p.

Research output: Contribution to journalArticle

Heterochromatin
Fluorescence In Situ Hybridization
Genetic Recombination
Centromere
Bryophyta
34 Citations (Scopus)

A tandem repetitive sequence located in the centromeric region of common wheat (Triticum aestivum) chromosomes

Kishii, M., Nagaki, K. & Tsujimoto, H., 2001, In : Chromosome Research. 9, 5, p. 417-428 12 p.

Research output: Contribution to journalArticle

Nucleic Acid Repetitive Sequences
Centromere
Triticum
Chromosomes
Retroelements
2000
64 Citations (Scopus)

Development of an efficient maintenance and screening system for large-insert genomic DNA libraries of hexaploid wheat in a transformation-competent artificial chromosome (TAC) vector

Liu, Y. G., Nagaki, K., Fujita, M., Kawaura, K., Uozumi, M. & Ogihara, Y., 2000, In : Plant Journal. 23, 5, p. 687-695 9 p.

Research output: Contribution to journalArticle

Artificial Chromosomes
Genomic Library
DNA libraries
hexaploidy
Gene Library
1999
17 Citations (Scopus)

A novel repetitive sequence, termed the JNK repeat family, located on an extra heterochromatic region of chromosome 2R of Japanese rye

Nagaki, K., Tsujimoto, H. & Sasakuma, T., 1999, In : Chromosome Research. 7, 2, p. 95-101 7 p.

Research output: Contribution to journalArticle

Heterochromatin
Nucleic Acid Repetitive Sequences
Chromosomes
Cytosine Nucleotides
Clone Cells
40 Citations (Scopus)

De novo synthesis of telomere sequences at the healed breakpoints of wheat deletion chromosomes

Tsujimoto, H., Usami, N., Hasegawa, K., Yamada, T., Nagaki, K. & Sasakuma, T., 1999, In : MGG Molecular & General Genetics. 262, 4-5, p. 851-856 6 p.

Research output: Contribution to journalArticle

Chromosome Deletion
Telomere
Triticum
Telomerase
Ribosomal DNA
30 Citations (Scopus)

Exclusive localization of tandem repetitive sequences in sulbtelomeric heterochromatin regions of Leymus racemosus (Poaceae, Triticeae)

Kishii, M., Nagaki, K., Tsujimoto, H. & Sasakuma, T., 1999, In : Chromosome Research. 7, 7, p. 519-529 11 p.

Research output: Contribution to journalArticle

Heterochromatin
Nucleic Acid Repetitive Sequences
Poaceae
Chromosomes
Karyotype
9 Citations (Scopus)

Tandem repetitive Afa-family sequences from Leymus racemosus and Psathyrostachys juncea (Poaceae)

Nagaki, K., Kishii, M., Tsujimoto, H. & Sasakuma, T., 1999, In : Genome. 42, 6, p. 1258-1260 3 p.

Research output: Contribution to journalArticle

Leymus racemosus
Elymus
Psathyrostachys juncea
Triticum
In Situ Hybridization
1998
37 Citations (Scopus)

A novel repetitive sequence of sugar cane, SCEN family, locating on centromeric regions

Nagaki, K., Tsujimoto, H. & Sasakuma, T., 1998, In : Chromosome Research. 6, 4, p. 295-302 8 p.

Research output: Contribution to journalArticle

Canes
Nucleic Acid Repetitive Sequences
Chromosomes
Haploidy
In Situ Hybridization
28 Citations (Scopus)

Dynamics of tandem repetitive Afa-family sequences in Triticeae, wheat- related species

Nagaki, K., Tsujimoto, H. & Sasakuma, T., 1998, In : Journal of Molecular Evolution. 47, 2, p. 183-189 7 p.

Research output: Contribution to journalArticle

Triticum
genome
Genes
wheat
Genome
6 Citations (Scopus)

H genome specific repetitive sequence, pEt2, of Elymus trachycaulus in part of afa family of triticeae

Nagaki, K., Tsujimoto, H. & Sasakuma, T., 1998, In : Genome. 41, 1, p. 134-136 3 p.

Research output: Contribution to journalArticle

Elymus
Elymus trachycaulus
repetitive sequences
Nucleic Acid Repetitive Sequences
Genome
1997
34 Citations (Scopus)

Identification of individual barley chromosomes based on repetitive sequences: Conservative distribution of Afa-family repetitive sequences on the chromosomes of barley and wheat

Tsujimoto, H., Mukai, Y., Akagawa, K., Nagaki, K., Fujigaki, J., Yamamoto, M. & Sasakuma, T., Oct 1997, In : Genes and Genetic Systems. 72, 5, p. 303-309 7 p.

Research output: Contribution to journalArticle

repetitive sequences
Nucleic Acid Repetitive Sequences
Hordeum
Chromosomes
Triticum
1995
101 Citations (Scopus)

Molecular characterization of a tandem repeat, Afa family, and its distribution among Triticeae

Nagaki, K., Tsujimoto, H., Isono, K. & Sasakuma, T., Jun 1995, In : Genome. 38, 3, p. 479-486 8 p.

Research output: Contribution to journalArticle

Tandem Repeat Sequences
tandem repeat sequences