• 959 Citations
  • 18 h-Index
20082019
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Research Output 2008 2019

  • 959 Citations
  • 18 h-Index
  • 31 Article
  • 1 Letter
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Article
2018

DEC205 mediates local and systemic immune responses to Helicobacter pylori infection in humans

Kita, M., Yokota, K., Kageyama, C., Take, S., Goto, K., Kawahara, Y., Matsushita, O. & Okada, H., Jan 1 2018, In : Oncotarget. 9, 22, p. 15828-15835 8 p.

Research output: Contribution to journalArticle

Helicobacter Infections
Helicobacter pylori
Gastric Mucosa
Macrophages
Phagocytosis
2017
2 Citations (Scopus)

Expression of Collagenase is Regulated by the VarS/VarA Two-Component Regulatory System in Vibrio alginolyticus

Mima, T., Goto, K., Yamamoto, Y., Maeda, K., Shirakawa, T., Matsui, S., Murata, Y., Koide, T., Tokumitsu, H. & Matsushita, O., Oct 9 2017, (Accepted/In press) In : Journal of Membrane Biology. p. 1-13 13 p.

Research output: Contribution to journalArticle

Vibrio alginolyticus
Colicins
Collagenases
Phosphorylation
Virulence Factors
15 Citations (Scopus)

Fungal ITS1 deep-sequencing strategies to reconstruct the composition of a 26-species community and evaluation of the gut mycobiota of healthy Japanese individuals

Motooka, D., Fujimoto, K., Tanaka, R., Yaguchi, T., Goto, K., Maeda, Y., Furuta, Y., Kurakawa, T., Goto, N., Yasunaga, T., Narazaki, M., Kumanogoh, A., Horii, T., Iida, T., Takeda, K. & Nakamura, S., Feb 15 2017, In : Frontiers in Microbiology. 8, FEB, 238.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
Databases
Microbiota
Candida albicans
Saccharomyces cerevisiae
2016
111 Citations (Scopus)

Dysbiosis Contributes to Arthritis Development via Activation of Autoreactive T Cells in the Intestine

Maeda, Y., Kurakawa, T., Umemoto, E., Motooka, D., Ito, Y., Goto, K., Hirota, K., Matsushita, M., Furuta, Y., Narazaki, M., Sakaguchi, N., Kayama, H., Nakamura, S., Iida, T., Saeki, Y., Kumanogoh, A., Sakaguchi, S. & Takeda, K., Nov 1 2016, In : Arthritis and Rheumatology. 68, 11, p. 2646-2661 16 p.

Research output: Contribution to journalArticle

Dysbiosis
Arthritis
Intestines
T-Lymphocytes
Rheumatoid Arthritis
54 Citations (Scopus)

Lypd8 promotes the segregation of flagellated microbiota and colonic epithelia

Okumura, R., Kurakawa, T., Nakano, T., Kayama, H., Kinoshita, M., Motooka, D., Goto, K., Kimura, T., Kamiyama, N., Kusu, T., Ueda, Y., Wu, H., Iijima, H., Barman, S., Osawa, H., Matsuno, H., Nishimura, J., Ohba, Y., Nakamura, S., Iida, T. & 4 others, Yamamoto, M., Umemoto, E., Sano, K. & Takeda, K., Apr 7 2016, In : Nature. 532, 7597, p. 117-121 5 p.

Research output: Contribution to journalArticle

Microbiota
Mucus
Epithelium
Bacteria
Dextran Sulfate
12 Citations (Scopus)

Temporal dynamics of bacterial microbiota in the human oral cavity determined using an in situ model of dental biofilms

Wake, N., Asahi, Y., Noiri, Y., Hayashi, M., Motooka, D., Nakamura, S., Goto, K., Miura, J., Machi, H., Iida, T. & Ebisu, S., Aug 10 2016, In : npj Biofilms and Microbiomes. 2, 16018.

Research output: Contribution to journalArticle

Dental Models
Microbiota
Biofilms
Mouth
Gram-Negative Anaerobic Bacteria
2015
25 Citations (Scopus)

Baseline assessment of mesophotic reefs of the Vitória-Trindade Seamount Chain based on water quality, microbial diversity, benthic cover and fish biomass data

Meirelles, P. M., Amado-Filho, G. M., Pereira-Filho, G. H., Pinheiro, H. T., De Moura, R. L., Joyeux, J. C., Mazzei, E. F., Bastos, A. C., Edwards, R. A., Dinsdale, E., Paranhos, R., Santos, E. O., Iida, T., Goto, K., Nakamura, S., Sawabe, T., Rezende, C. E., Gadelha, L. M. R., Francini-Filho, R. B., Thompson, C. & 1 others, Thompson, F. L., Jun 19 2015, In : PLoS One. 10, 6, e0130084.

Research output: Contribution to journalArticle

algae
Metagenomics
Reefs
Water Quality
Biodiversity
3 Citations (Scopus)

Functional specialization in regulation and quality control in thermal adaptive evolution

Yama, K., Matsumoto, Y., Murakami, Y., Seno, S., Matsuda, H., Goto, K., Motooka, D., Nakamura, S., Ying, B. W. & Yomo, T., Nov 1 2015, In : Genes to Cells. 20, 11, p. 943-955 13 p.

Research output: Contribution to journalArticle

Quality Control
Hot Temperature
Chaperonins
Protein Folding
Gene Expression
7 Citations (Scopus)

Interaction between the Type III Effector VopO and GEF-H1 Activates the RhoA-ROCK Pathway

Hiyoshi, H., Okada, R., Matsuda, S., Goto, K., Akeda, Y., Iida, T. & Kodama, T., Mar 1 2015, In : PLoS Pathogens. 11, 3, p. 1-19 19 p., e1004694.

Research output: Contribution to journalArticle

Guanine Nucleotide Exchange Factors
Stress Fibers
Vibrio parahaemolyticus
Actins
rhoA GTP-Binding Protein
35 Citations (Scopus)

Metagenomic Analysis Reveals Dynamic Changes of Whole Gut Microbiota in the Acute Phase of Intensive Care Unit Patients

Ojima, M., Motooka, D., Shimizu, K., Goto, K., Shintani, A., Yoshiya, K., Nakamura, S., Ogura, H., Iida, T. & Shimazu, T., Dec 29 2015, (Accepted/In press) In : Digestive Diseases and Sciences. p. 1-7 7 p.

Research output: Contribution to journalArticle

Metagenomics
Intensive Care Units
Bacteroidetes
High-Throughput Nucleotide Sequencing
Urban Hospitals
23 Citations (Scopus)

Post-Golgi anterograde transport requires GARP-dependent endosome-to-TGN retrograde transport

Hirata, T., Fujita, M., Nakamura, S., Goto, K., Motooka, D., Murakami, Y., Maeda, Y. & Kinoshita, T., Sep 1 2015, In : Molecular Biology of the Cell. 26, 17, p. 3071-3084 14 p.

Research output: Contribution to journalArticle

trans-Golgi Network
Endosomes
Proteins
Glycosylphosphatidylinositols
Membrane Proteins
5 Citations (Scopus)

Regulation of Vibrio parahaemolyticus T3SS2 gene expression and function of T3SS2 effectors that modulate actin cytoskeleton

Kodama, T., Hiyoshi, H., Okada, R., Matsuda, S., Goto, K. & Iida, T., Feb 1 2015, In : Cellular Microbiology. 17, 2, p. 183-190 8 p.

Research output: Contribution to journalArticle

Vibrio parahaemolyticus
Actin Cytoskeleton
Gene Expression
Seafood
Gastroenteritis
2014
6 Citations (Scopus)

Allergic bronchopulmonary mycosis due to co-infection with Aspergillus fumigatus and Schizophyllum commune

Seki, M., Ohno, H., Goto, K., Motooka, D., Nakamura, S., Iida, T., Miyazaki, Y. & Tomono, K., 2014, In : IDCases. 1, p. 5-8 4 p.

Research output: Contribution to journalArticle

Schizophyllum
Invasive Pulmonary Aspergillosis
Pulmonary Eosinophilia
Aspergillus fumigatus
Coinfection
35 Citations (Scopus)

BEC, a novel enterotoxin of clostridium perfringens found in human clinical isolates from acute gastroenteritis outbreaks

Yonogi, S., Matsuda, S., Kawai, T., Yoda, T., Harada, T., Kumeda, Y., Goto, K., Hiyoshi, H., Nakamura, S., Kodama, T. & Iida, T., 2014, In : Infection and Immunity. 82, 6, p. 2390-2399 10 p.

Research output: Contribution to journalArticle

Gastroenteritis
Disease Outbreaks
Clostridium perfringens
Plasmids
Clostridium enterotoxin
9 Citations (Scopus)

Complete nucleotide sequence of a plasmid containing the botulinum neurotoxin gene in Clostridium botulinum type B strain 111 isolated from an infant patient in Japan

Hosomi, K., Sakaguchi, Y., Kohda, T., Goto, K., Motooka, D., Nakamura, S., Umeda, K., Iida, T., Kozaki, S. & Mukamoto, M., Nov 19 2014, In : Molecular Genetics and Genomics. 289, 6, p. 1267-1274 8 p.

Research output: Contribution to journalArticle

Clostridium botulinum type B
Neurotoxins
Japan
Plasmids
Genes
12 Citations (Scopus)

Comprehensive metagenomic approach for detecting causative microorganisms in culture-negative infective endocarditis

Imai, A., Goto, K., Asano, Y., Yamada, N., Motooka, D., Fukushima, M., Kanzaki, M., Ohtani, T., Sakata, Y., Nishi, H., Toda, K., Sawa, Y., Komuro, I., Horii, T., Iida, T., Nakamura, S. & Takashima, S., Mar 15 2014, In : International Journal of Cardiology. 172, 2

Research output: Contribution to journalArticle

Bacterial Endocarditis
Metagenomics
Streptococcus mutans
Enterococcus faecalis
Endocarditis
44 Citations (Scopus)

Generation of colonic IgA-secreting cells in the caecal patch

Masahata, K., Umemoto, E., Kayama, H., Kotani, M., Nakamura, S., Kurakawa, T., Kikuta, J., Goto, K., Motooka, D., Sato, S., Higuchi, T., Baba, Y., Kurosaki, T., Kinoshita, M., Shimada, Y., Kimura, T., Okumura, R., Takeda, A., Tajima, M., Yoshie, O. & 6 others, Fukuzawa, M., Kiyono, H., Fagarasan, S., Iida, T., Ishii, M. & Takeda, K., 2014, In : Nature Communications. 5, p. 3704 1 p.

Research output: Contribution to journalArticle

Immunoglobulin A
intestines
cells
Large Intestine
Small Intestine
99 Citations (Scopus)

Oral pathobiont induces systemic inflammation and metabolic changes associated with alteration of gut microbiota

Arimatsu, K., Yamada, H., Miyazawa, H., Minagawa, T., Nakajima, M., Ryder, M. I., Goto, K., Motooka, D., Nakamura, S., Iida, T. & Yamazaki, K., May 6 2014, In : Scientific Reports. 4, 4828.

Research output: Contribution to journalArticle

Porphyromonas gingivalis
Periodontitis
Inflammation
Tight Junction Proteins
Dental Plaque
49 Citations (Scopus)

Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes

Miyamoto, M., Motooka, D., Goto, K., Imai, T., Yoshitake, K., Goto, N., Iida, T., Yasunaga, T., Horii, T., Arakawa, K., Kasahara, M. & Nakamura, S., Aug 21 2014, In : BMC Genomics. 15, 1, 699.

Research output: Contribution to journalArticle

Bacterial Genomes
Chromosomes
Genome
Ions
Vibrio parahaemolyticus

Peyer's patches play a protective role in nonsteroidal anti-inflammatory drug-induced enteropathy in mice

Hiyama, S., Iijima, H., Shinzaki, S., Inoue, T., Shiraishi, E., Kawai, S., Araki, M., Kato, M., Hayashi, Y., Nishida, T., Fujii, H., Mukai, A., Shibata, N., Sato, S., Kiyono, H., Goto, K., Motooka, D., Nakamura, S., Iida, T., Tsujii, M. & 1 others, Takehara, T., 2014, In : Inflammatory Bowel Diseases. 20, 5, p. 790-799 10 p.

Research output: Contribution to journalArticle

Peyer's Patches
Dendritic Cells
Anti-Inflammatory Agents
Indomethacin
Interleukin-10
29 Citations (Scopus)

Physiologic and metagenomic attributes of the rhodoliths forming the largest CaCO3 bed in the South Atlantic Ocean

Cavalcanti, G. S., Gregoracci, G. B., Dos Santos, E. O., Silveira, C. B., Meirelles, P. M., Longo, L., Goto, K., Nakamura, S., Iida, T., Sawabe, T., Rezende, C. E., Francini-Filho, R. B., Moura, R. L., Amado-Filho, G. M. & Thompson, F. L., Jan 2014, In : ISME Journal. 8, 1, p. 52-62 11 p.

Research output: Contribution to journalArticle

rhodolith
Atlantic Ocean
Metagenomics
algae
Carbon
4 Citations (Scopus)

Severe respiratory failure due to co-infection with human metapneumovirus and Streptococcus pneumoniae

Seki, M., Yoshida, H., Goto, K., Hamada, N., Motooka, D., Nakamura, S., Yamamoto, N., Hamaguchi, S., Akeda, Y., Watanabe, H., Iida, T. & Tomono, K., 2014, In : Respiratory Medicine Case Reports. 12, p. 13-15 3 p.

Research output: Contribution to journalArticle

Metapneumovirus
Bronchopneumonia
Bronchiolitis
Human Genome
Streptococcus pneumoniae
2013
27 Citations (Scopus)

Fatal sepsis caused by an unusual Klebsiella species that was misidentified by an automated identification system

Seki, M., Goto, K., Nakamura, S., Akeda, Y., Yoshii, T., Miyaguchi, S., Inohara, H., Horii, T., Oishi, K., Iida, T. & Tomono, K., May 2013, In : Journal of Medical Microbiology. 62, PART5, p. 801-803 3 p.

Research output: Contribution to journalArticle

Klebsiella
Sepsis
Klebsiella pneumoniae
Klebsiella Infections
Ribitol
50 Citations (Scopus)

Metagenomic Analysis of Healthy and White Plague-Affected Mussismilia braziliensis Corals

Garcia, G. D., Gregoracci, G. B., Santos, E. D. O., Meirelles, P. M., Silva, G. G. Z., Edwards, R., Sawabe, T., Goto, K., Nakamura, S., Iida, T., de Moura, R. L. & Thompson, F. L., May 2013, In : Microbial Ecology. 65, 4, p. 1076-1086 11 p.

Research output: Contribution to journalArticle

plague
corals
coral
Neisseriales
Vibrionales
33 Citations (Scopus)

Metagenomic profile of gut microbiota in children during cholera and recovery

Monira, S., Nakamura, S., Goto, K., Izutsu, K., Watanabe, H., Alam, N. H., Nakaya, T., Horii, T., Ali, S. I., Iida, T. & Alam, M., 2013, In : Gut Pathogens. 5, 1, 1.

Research output: Contribution to journalArticle

Metagenomics
Cholera
Bacteroidetes
Proteobacteria
Actinobacteria
3 Citations (Scopus)

Mode of binding of RNA polymerase α subunit to the phased A-tracts upstream of the phospholipase C gene promoter of Clostridium perfringens

Katayama, S., Ishibashi, K., Goto, K. & Nakamura, D., Oct 2013, In : Anaerobe. 23, p. 62-69 8 p.

Research output: Contribution to journalArticle

Clostridium perfringens
Surface Plasmon Resonance
Type C Phospholipases
DNA-Directed RNA Polymerases
Amino Acids
2011
80 Citations (Scopus)

Gut microbiota of healthy and malnourished children in Bangladesh

Monira, S., Nakamura, S., Goto, K., Izutsu, K., Watanabe, H., Alam, N. H., Endtz, H. P., Cravioto, A., Ali, S. I., Nakaya, T., Horii, T., Iida, T. & Alam, M., 2011, In : Frontiers in Microbiology. 2, NOV

Research output: Contribution to journalArticle

Bangladesh
Proteobacteria
Bacteroidetes
Child Nutrition Disorders
Escherichia
46 Citations (Scopus)

VopV, an F-actin-binding type III secretion effector, is required for vibrio parahaemolyticus-induced enterotoxicity

Hiyoshi, H., Kodama, T., Saito, K., Goto, K., Matsuda, S., Akeda, Y., Honda, T. & Iida, T., Oct 4 2011, In : Cell Host and Microbe. 10, 4, p. 401-409 9 p.

Research output: Contribution to journalArticle

Vibrio parahaemolyticus
Actins
Cholera
Gastroenteritis
Gram-Negative Bacteria
2010
68 Citations (Scopus)

Bile acid-induced virulence gene expression of Vibrio parahaemolyticus reveals a novel therapeutic potential for bile acid sequestrants

Goto, K., Kodama, T., Hiyoshi, H., Izutsu, K., Park, K. S., Dryselius, R., Akeda, Y., Honda, T. & Iida, T., 2010, In : PLoS One. 5, 10, e13365.

Research output: Contribution to journalArticle

Polyamideimides
Vibrio parahaemolyticus
bile acids
bile
Bile Acids and Salts
37 Citations (Scopus)

Two regulators of Vibrio parahaemolyticus play important roles in enterotoxicity by controlling the expression of genes in the Vp-PAI region

Kodama, T., Goto, K., Hiyoshi, H., Morita, M., Izutsu, K., Akeda, Y., Park, K. S., Cantarelli, V. V., Dryselius, R., Iida, T. & Honda, T., Jan 13 2010, In : PLoS One. 5, 1, e8678.

Research output: Contribution to journalArticle

Polyamideimides
Vibrio parahaemolyticus
Genes
Virulence
Gene Expression
2008
35 Citations (Scopus)

Identification of two translocon proteins of Vibrio parahaemolyticus type III secretion system 2

Kodama, T., Hiyoshi, H., Goto, K., Akeda, Y., Matsuda, S., Park, K. S., Cantarelli, V. V., Iida, T. & Honda, T., Sep 2008, In : Infection and Immunity. 76, 9, p. 4282-4289 8 p.

Research output: Contribution to journalArticle

Vibrio parahaemolyticus
Proteins
Cell Membrane
Bacteria
Type III Secretion Systems