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Hajime Ikeda

  • 428 Citations
  • 12 h-Index
20062019
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Research Output 2006 2019

  • 428 Citations
  • 12 h-Index
  • 44 Article
2019

Phylogeography of Pulsatilla cernua (Ranunculaceae), a grassland species, in Japan

Takaishi, A., Kozhevnikov, A. E., Kozhevnikova, Z. V., Ikeda, H., Fujii, N. & Soejima, A., Jun 1 2019, In : Ecology and Evolution. 9, 12, p. 7262-7272 11 p.

Research output: Contribution to journal › Article

Open Access
Anemone cernua
grasslands
Ranunculaceae
phylogeography
Japan
2018

Post-glacial East Asian origin of the alpine shrub Phyllodoce aleutica (Ericaceae) in Beringia

Ikeda, H., Yakubov, V., Barkalov, V. & Setoguchi, H., Jun 1 2018, In : Journal of Biogeography. 45, 6, p. 1261-1274 14 p.

Research output: Contribution to journal › Article

Phyllodoce
Beringia
Ericaceae
Postglacial
shrub
2017
1 Citation (Scopus)

Genetic structure of Hepatica nobilis var. japonica, focusing on within population flower color polymorphism

Kameoka, S., Sakio, H., Abe, H., Ikeda, H. & Setoguchi, H., Mar 1 2017, In : Journal of Plant Research. 130, 2, p. 263-271 9 p.

Research output: Contribution to journal › Article

Anemone (plant)
genetic polymorphism
flowers
color
Sea of Japan
1 Citation (Scopus)

Importance of beringia for the divergence of two northern pacific alpine plants, Phyllodoce aleutica and Phyllodoce glanduliflora (Ericaceae)

Ikeda, H. & Setoguchi, H., 2017, In : Biological Journal of the Linnean Society. 122, 2, p. 249-257 9 p.

Research output: Contribution to journal › Article

Phyllodoce
Beringia
alpine plants
Ericaceae
divergence
2 Citations (Scopus)

Late Pleistocene origin of the entire circumarctic range of the arctic-alpine plant Kalmia procumbens

Ikeda, H., Eidesen, P. B., Yakubov, V., Barkalov, V., Brochmann, C. & Setoguchi, H., 2017, (Accepted/In press) In : Molecular Ecology.

Research output: Contribution to journal › Article

Kalmia
alpine plants
Genetic Structures
genetic structure
Arctic region
3 Citations (Scopus)

Phylogeographical insight into the Aleutian flora inferred from the historical range shifts of the alpine shrub Therorhodion camtschaticum (Pall.) Small (Ericaceae)

Hata, D., Higashi, H., Yakubov, V., Barkalov, V., Ikeda, H. & Setoguchi, H., Feb 1 2017, In : Journal of Biogeography. 44, 2, p. 283-293 11 p.

Research output: Contribution to journal › Article

Aleutian Islands
Ericaceae
flora
shrub
shrubs
2016

Corrigendum to "Pleistocene climatic oscillations and the speciation history of an alpine endemic and a widespread arctic-alpine plant."[New Phytologist (2012) 194: 583-594.]

Ikeda, H., Jun 1 2016, In : New Phytologist. 210, 4, p. 1479 1 p.

Research output: Contribution to journal › Article

alpine plants
oscillation
Arctic region
indigenous species
corrigendum
7 Citations (Scopus)

From the north into the Himalayan-Hengduan Mountains: Fossil-calibrated phylogenetic and biogeographical inference in the arctic-alpine genus Diapensia (Diapensiaceae)

Hou, Y., Bjorå, C. S., Ikeda, H., Brochmann, C. & Popp, M., 2016, (Accepted/In press) In : Journal of Biogeography.

Research output: Contribution to journal › Article

Diapensiaceae
Arctic region
fossils
mountains
fossil
4 Citations (Scopus)

Importance of demographic history for phylogeographic inference on the arctic-alpine plant Phyllodoce caerulea in East Asia

Ikeda, H., Sakaguchi, S., Yakubov, V., Barkalov, V. & Setoguchi, H., Feb 1 2016, In : Heredity. 116, 2, p. 232-238 7 p.

Research output: Contribution to journal › Article

Far East
Demography
Japan
Genetic Structures
Ericaceae
2015
5 Citations (Scopus)

Historical biogeography of river-weeds (Podostemaceae)

Koi, S., Ikeda, H., Rutishauser, R. & Kato, M., Nov 1 2015, In : Aquatic Botany. 127, p. 62-69 8 p., 2809.

Research output: Contribution to journal › Article

Podostemaceae
biogeography
weed
probability analysis
weeds
4 Citations (Scopus)

Persistent history of the bird-dispersed arctic–alpine plant Vaccinium vitis-idaea L. (Ericaceae) in Japan

Ikeda, H., Yoneta, Y., Higashi, H., Eidesen, P. B., Barkalov, V., Yakubov, V., Brochmann, C. & Setoguchi, H., May 1 2015, In : Journal of Plant Research. 128, 3, p. 437-444 8 p.

Research output: Contribution to journal › Article

Vaccinium vitis-idaea
Ericaceae
Japan
birds
climate
2014

Erratum to: Polymorphisms of E1 and GIGANTEA in wild populations of Lotus japonicus (Journal of Plant Research, 10.1007/s10265-014-0649-8)

Wakabayashi, T., Oh, H., Kawaguchi, M., Harada, K., Sato, S., Ikeda, H. & Setoguchi, H., 2014, In : Journal of Plant Research. 128, 1, p. 221 1 p.

Research output: Contribution to journal › Article

Lotus corniculatus var. japonicus
polymorphism
3 Citations (Scopus)

Lineage diversification and hybridization in the Cayratia japonica-Cayratia tenuifolia species complex

Ishikawa, N., Ikeda, H., Yi, T. S., Takabe-Ito, E., Okada, H. & Tsukaya, H., 2014, In : Molecular Phylogenetics and Evolution. 75, 1, p. 227-238 12 p.

Research output: Contribution to journal › Article

Southeastern Asia
Far East
species complex
East Asia
South East Asia
8 Citations (Scopus)

Molecular evidence for ancient relicts of arctic-alpine plants in East Asia

Ikeda, H., Yakubov, V., Barkalov, V. & Setoguchi, H., 2014, In : New Phytologist. 203, 3, p. 980-988 9 p.

Research output: Contribution to journal › Article

Ericaceae
alpine plants
Far East
Climate
East Asia
6 Citations (Scopus)

Molecular phylogeny of Shortia sensu lato (Diapensiaceae) based on multiple nuclear sequences

Higashi, H., Ikeda, H. & Setoguchi, H., 2014, In : Plant Systematics and Evolution. 301, 2, p. 523-529 7 p.

Research output: Contribution to journal › Article

Diapensiaceae
phylogeny
phylogenetics
chloroplast
ribosomal DNA
6 Citations (Scopus)

Phylogeographical study of the alpine plant Cassiope lycopodioides (Ericaceae) suggests a range connection between the Japanese archipelago and Beringia during the Pleistocene

Ikeda, H., Higashi, H., Yakubov, V., Barkalov, V. & Setoguchi, H., 2014, In : Biological Journal of the Linnean Society. 113, 2, p. 497-509 13 p.

Research output: Contribution to journal › Article

Beringia
alpine plants
Ericaceae
East Asia
archipelago
1 Citation (Scopus)

Polymorphisms of E1 and GIGANTEA in wild populations of Lotus japonicus

Wakabayashi, T., Oh, H., Kawaguchi, M., Harada, K., Sato, S., Ikeda, H. & Hiroaki, S., Oct 30 2014, In : Journal of Plant Research. 127, 6, p. 651-660 10 p.

Research output: Contribution to journal › Article

Lotus corniculatus var. japonicus
genetic polymorphism
flowering
Amino Acid Sequence Homology
Circadian Clocks
2013
10 Citations (Scopus)

A multilocus sequencing approach reveals the cryptic phylogeographical history of phyllodoce nipponicamakino (ericaceae)

Ikeda, H. & Setoguchi, H., Sep 2013, In : Biological Journal of the Linnean Society. 110, 1, p. 214-226 13 p.

Research output: Contribution to journal › Article

Phyllodoce
alpine plants
Ericaceae
chloroplast DNA
demographic statistics
4 Citations (Scopus)

Multiple introgression events and range shifts in Schizocodon (Diapensiaceae) during the Pleistocene

Higashi, H., Sakaguchi, S., Ikeda, H., Isagi, Y. & Setoguchi, H., Sep 2013, In : Botanical Journal of the Linnean Society. 173, 1, p. 46-63 18 p.

Research output: Contribution to journal › Article

Diapensiaceae
plastid
introgression
plastid DNA
Pleistocene

Phylogeographic study of Phyllodoce aleutica (Ericaceae) in the Japanese archipelago

Ikeda, H., 2013, In : Bulletin of the National Museum of Nature and Science, Series B. 39, p. 87-94 8 p.

Research output: Contribution to journal › Article

Recent colonization by a coastal plant of inland habitats at an ancient freshwater lake, Lake Biwa: Multilocus sequencing and a demographic history of lathyrus japonicus (fabaceae)

Ohtsuki, T., Ikeda, H. & Setoguchi, H., 2013, In : Ecology and Evolution. 3, 8, p. 2600-2611 12 p.

Research output: Contribution to journal › Article

Lathyrus japonicus
demographic history
Fabaceae
demographic statistics
colonization
2012

Erratum to: Population fragmentation causes randomly fixed genotypes in populations of Arabidopsis kamchatica in the Japanese Archipelago (J Plant Res, 10.1007/s10265-011-0436-8)

Higashi, H., Ikeda, H. & Setoguchi, H., Mar 2012, In : Journal of Plant Research. 125, 2, p. 235-236 2 p.

Research output: Contribution to journal › Article

Arabidopsis
genotype

Genetic diversity in multilocus nuclear genes of Phyllodoce nipponica (Ericaceae)

Ikeda, H., 2012, In : Bulletin of the National Museum of Nature and Science, Series B. 8, p. 55-61 7 p.

Research output: Contribution to journal › Article

19 Citations (Scopus)

Pleistocene climatic oscillations and the speciation history of an alpine endemic and a widespread arctic-alpine plant

Ikeda, H., Carlsen, T., Fujii, N., Brochmann, C. & Setoguchi, H., Apr 2012, In : New Phytologist. 194, 2, p. 583-594 12 p.

Research output: Contribution to journal › Article

alpine plants
oscillation
Arctic region
History
history
12 Citations (Scopus)

Population fragmentation causes randomly fixed genotypes in populations of Arabidopsis kamchatica in the Japanese Archipelago

Higashi, H., Ikeda, H. & Setoguchi, H., Mar 2012, In : Journal of Plant Research. 125, 2, p. 223-233 11 p.

Research output: Contribution to journal › Article

Arabidopsis
genotype
alpine plants
oscillation
genetic polymorphism
2011
8 Citations (Scopus)

Genetic structure of the critically endangered plant Tricyrtis ishiiana (Convallariaceae) in relict populations of Japan

Setoguchi, H., Mitsui, Y., Ikeda, H., Nomura, N. & Tamura, A., Apr 2011, In : Conservation Genetics. 12, 2, p. 491-501 11 p.

Research output: Contribution to journal › Article

Asparagaceae
Genetic Structures
endangered species
genetic structure
Japan
10 Citations (Scopus)

Long-term isolation of the coastal plant Calystegia soldanella (Convolvulaceae) in ancient freshwater Lake Biwa, Japan

Noda, A., Mitsui, Y., Ikeda, H. & Setoguchi, H., Jan 2011, In : Biological Journal of the Linnean Society. 102, 1, p. 51-66 16 p.

Research output: Contribution to journal › Article

Convolvulaceae
Japan
lakes
lake
haplotypes
5 Citations (Scopus)

Molecular evolution of cryptochrome genes and the evolutionary manner of photoreceptor genes in Cardamine nipponica (Brassicaceae)

Ikeda, H., Fujii, N. & Setoguchi, H., 2011, In : Journal of Plant Research. 124, 1, p. 85-92 8 p.

Research output: Contribution to journal › Article

Cardamine
Brassicaceae
photoreceptors
phytochrome
genes
2010

Genomic structure of lowland and Highland ecotypes of Arabidopsis halleri ssp. gemmifera (Brassicaceae) on Mt. Ibuki

Ikeda, H., 2010, In : Acta Phytotaxonomica et Geobotanica. 61, 1, p. 21-26 6 p.

Research output: Contribution to journal › Article

19 Citations (Scopus)

Natural selection on PHYE by latitude in the Japanese archipelago: Insight from locus specific phylogeographic structure in Arcterica nana (Ericaceae)

Ikeda, H. & Setoguchi, H., Jul 2010, In : Molecular Ecology. 19, 13, p. 2779-2791 13 p.

Research output: Contribution to journal › Article

Ericaceae
Phytochrome
Genetic Selection
phytochrome
natural selection
2009
20 Citations (Scopus)

Application of the isolation with migration model demonstrates the pleistocene origin of geographic differentiation in cardamine nipponica (brassicaceae), an endemic japanese alpine plant

Ikeda, H., Fujii, N. & Setoguchi, H., Oct 2009, In : Molecular Biology and Evolution. 26, 10, p. 2207-2216 10 p.

Research output: Contribution to journal › Article

Cardamine
Brassicaceae
alpine plants
provenance
Pleistocene
2 Citations (Scopus)

Development and characterization of microsatellite loci in the endangered Tricyrtis ishiiana (Convallariaceae), a local endemic plant in Japan

Setoguchi, H., Mitsui, Y., Ikeda, H., Nomura, N. & Tamura, A., Jun 2009, In : Conservation Genetics. 10, 3, p. 705-707 3 p.

Research output: Contribution to journal › Article

Asparagaceae
heterozygosity
Microsatellite Repeats
population genetics
herb
7 Citations (Scopus)

Genetic structure among and within populations of the serpentine endemic Heteropappus hispidus ssp. leptocladus (Compositae)

Yokoo, T., Kobayashi, S., Oginuma, K., Fujikawa, K., Mitsui, Y., Ikeda, H. & Setoguchi, H., Oct 2009, In : Biochemical Systematics and Ecology. 37, 4, p. 275-284 10 p.

Research output: Contribution to journal › Article

Heteropappus
Asteraceae
Genetic Structures
genetic structure
Calcium Carbonate
8 Citations (Scopus)

Genetic structure of refugial populations of the temperate plant Shortia rotundifolia (Diapensiaceae) on a subtropical island

Dan, T., Ikeda, H., Mitsui, Y., Isagi, Y. & Setoguchi, H., Aug 2009, In : Conservation Genetics. 10, 4, p. 859-867 9 p.

Research output: Contribution to journal › Article

Diapensiaceae
Genetic Structures
Islands
genetic structure
population structure
21 Citations (Scopus)

High mountains of the Japanese archipelago as refugia for arctic-alpine plants: Phylogeography of Loiseleuria procumbens (L.) Desvaux (Ericaceae)

Ikeda, H., Senni, K., Fujii, N. & Setoguchi, H., Jun 2009, In : Biological Journal of the Linnean Society. 97, 2, p. 403-412 10 p.

Research output: Contribution to journal › Article

alpine plants
Ericaceae
phylogeography
refugium
refuge habitats
1 Citation (Scopus)

Isolation and characterization of microsatellite loci in Shortia rotundifolia (Diapensiaceae), an endangered relict plant on the Ryukyu Islands and Taiwan

Dan, T., Mitsui, Y., Ikeda, H., Isagi, Y. & Setoguchi, H., Jun 2009, In : Conservation Genetics. 10, 3, p. 507-509 3 p.

Research output: Contribution to journal › Article

Diapensiaceae
Ryukyu Archipelago
Taiwan
Islands
Microsatellite Repeats
20 Citations (Scopus)

Molecular evolution of phytochromes in Cardamine nipponica (Brassicaceae) suggests the involvement of PHYE in local adaptation

Ikeda, H., Fujii, N. & Setoguchi, H., Jun 2009, In : Genetics. 182, 2, p. 603-614 12 p.

Research output: Contribution to journal › Article

Cardamine
Phytochrome
Brassicaceae
Molecular Evolution
Genealogy and Heraldry
12 Citations (Scopus)

The homogenous genetic structure and inferred unique history of range shifts during the Pleistocene climatic oscillations of Arcterica nana (Maxim.) Makino (Ericaceae)

Ikeda, H. & Setoguchi, H., Mar 2009, In : Journal of Plant Research. 122, 2, p. 141-151 11 p.

Research output: Contribution to journal › Article

Ericaceae
Genetic Structures
oscillation
alpine plants
Spatial Analysis
2008
31 Citations (Scopus)

Consistent geographic structure among multiple nuclear sequences and cpDNA polymorphisms of Cardamine nipponica Franch. et Savat. (Brassicaceae)

Ikeda, H., Senni, K., Fujii, N. & Setoguchi, H., Jul 2008, In : Molecular Ecology. 17, 13, p. 3178-3188 11 p.

Research output: Contribution to journal › Article

Cardamine
Brassicaceae
Chloroplast DNA
Polymorphism
chloroplast DNA
25 Citations (Scopus)

Post-glacial range fragmentation is responsible for the current distribution of Potentilla matsumurae Th. Wolf (Rosaceae) in the Japanese archipelago

Ikeda, H., Senni, K., Fujii, N. & Setoguchi, H., May 2008, In : Journal of Biogeography. 35, 5, p. 791-800 10 p.

Research output: Contribution to journal › Article

Potentilla
Rosaceae
Postglacial
fragmentation
archipelago
25 Citations (Scopus)

Survival and genetic divergence of an arctic-alpine plant, Diapensia lapponica subsp. obovata (Fr. Schm.) Hultén (Diapensiaceae), in the high mountains of central Japan during climatic oscillations

Ikeda, H., Senni, K., Fujii, N. & Setoguchi, H., May 2008, In : Plant Systematics and Evolution. 272, 1-4, p. 197-210 14 p.

Research output: Contribution to journal › Article

Diapensiaceae
alpine plants
oscillation
Arctic region
divergence
2007
47 Citations (Scopus)

Phylogeography and refugia of the Japanese endemic alpine plant, Phyllodoce nipponica Makino (Ericaceae)

Ikeda, H. & Setoguchi, H., Jan 2007, In : Journal of Biogeography. 34, 1, p. 169-176 8 p.

Research output: Contribution to journal › Article

Phyllodoce
alpine plants
Ericaceae
phylogeography
mountain region
2006
22 Citations (Scopus)

Phylogeography of Arcterica nana (Ericaceae) suggests another range expansion history of Japanese alpine plants

Ikeda, H. & Setoguchi, H., Sep 2006, In : Journal of Plant Research. 119, 5, p. 489-495 7 p.

Research output: Contribution to journal › Article

alpine plants
Ericaceae
phylogeography
haplotypes
intergenic DNA
49 Citations (Scopus)

Refugia of Potentilla matsumurae (Rosaceae) located at high mountains in the Japanese archipelago

Ikeda, H., Senni, K., Fujii, N. & Setoguchi, H., Oct 2006, In : Molecular Ecology. 15, 12, p. 3731-3740 10 p.

Research output: Contribution to journal › Article

Potentilla
Rosaceae
Chloroplast DNA
Glaciers
refugium