Institute of Plant Science and Resources

Research Output 1978 2020

Filter
Article
2020

Application of the cellular oxidation biosensor to Toxicity Identification Evaluations for high-throughput toxicity assessment of river water

Ooi, L., Okazaki, K., Arias-Barreiro, C. R., Heng, L. Y. & Mori, I. C., May 2020, In : Chemosphere. 247, 125933.

Research output: Contribution to journalArticle

Open Access
Biosensing Techniques
Rivers
Biosensors
Toxicity
river water

Genetic determination for source capacity to support breeding of high-yielding rice (Oryza sativa)

Adachi, S., Ohkubo, S., San, N. S. & Yamamoto, T., Feb 1 2020, In : Molecular Breeding. 40, 2, 20.

Research output: Contribution to journalArticle

Breeding
Oryza sativa
rice
breeding
phenotype

Hormonal and transcriptional analyses of fruit development and ripening in different varieties of black pepper (Piper nigrum)

Khew, C. Y., Mori, I. C., Matsuura, T., Hirayama, T., Harikrishna, J. A., Lau, E. T., Augustine Mercer, Z. J. & Hwang, S. S., Jan 1 2020, In : Journal of Plant Research. 133, 1, p. 73-94 22 p.

Research output: Contribution to journalArticle

Piper nigrum
black pepper
fruiting
ripening
plant hormones

Introgression of chromosomal segments conferring early heading date from wheat diploid progenitor, Aegilops tauschii Coss., into Japanese elite wheat cultivars

Takumi, S., Mitta, S., Komura, S., Ikeda, T. M., Matsunaka, H., Sato, K., Yoshida, K. & Murai, K., Jan 1 2020, In : PloS one. 15, 1, e0228397.

Research output: Contribution to journalArticle

Open Access
Aegilops tauschii
heading
Diploidy
introgression
Triticum

Isolation and characterization of genes responsible for naphthalene degradation from thermophilic naphthalene degrader, Geobacillus sp. JF8

Miyazawa, D., Thanh, L. T. H., Tani, A., Shintani, M., Loc, N. H., Hatta, T. & Kimbara, K., Jan 2020, In : Microorganisms. 8, 1, 44.

Research output: Contribution to journalArticle

Open Access
Geobacillus
Genes
Oxidoreductases
gentisate 1,2-dioxygenase
Open Reading Frames

Preference for particular lanthanide species and thermal stability of XoxFs in Methylorubrum extorquens strain AM1

Wang, L., Hibino, A., Suganuma, S., Ebihara, A., Iwamoto, S., Mitsui, R., Tani, A., Shimada, M., Hayakawa, T. & Nakagawa, T., May 2020, In : Enzyme and Microbial Technology. 136, 109518.

Research output: Contribution to journalArticle

Lanthanoid Series Elements
Rare earth elements
Thermodynamic stability
Hot Temperature
Catalyst activity

Semi-dwarf 1 (sd1) gene enhances light penetration into the canopy through regulating leaf inclination angle in rice

San, N. S., Suzuki, K., Soda, K., Adachi, S., Kasahara, H., Yamamoto, T., Ikka, T., Kondo, K., Yamanouchi, U., Sugimoto, K., Nagamura, Y., Hirasawa, T. & Ookawa, T., Feb 1 2020, In : Field Crops Research. 246, 107694.

Research output: Contribution to journalArticle

leaf angle
penetration
rice
canopy
leaf blade
2019
2 Citations (Scopus)

Agrobacterium tumefaciens Enhances Biosynthesis of Two Distinct Auxins in the Formation of Crown Galls

Mashiguchi, K., Hisano, H., Takeda-Kamiya, N., Takebayashi, Y., Ariizumi, T., Gao, Y., Ezura, H., Sato, K., Zhao, Y., Hayashi, K. I. & Kasahara, H., Jan 1 2019, In : Plant & cell physiology. 60, 1, p. 29-37 9 p.

Research output: Contribution to journalArticle

Plant Tumors
crown galls
Agrobacterium tumefaciens
Indoleacetic Acids
acetamides
4 Citations (Scopus)

A symptomless hypovirus, CHV4, facilitates stable infection of the chestnut blight fungus by a coinfecting reovirus likely through suppression of antiviral RNA silencing

Aulia, A., Ida Bagus, A., Kondo, H., Hillman, B. I. & Suzuki, N., Jul 1 2019, In : Virology. 533, p. 99-107 9 p.

Research output: Contribution to journalArticle

Reoviridae
RNA Interference
Antiviral Agents
Fungi
Infection
2 Citations (Scopus)

AtALMT3 is Involved in Malate Efflux Induced by Phosphorus Deficiency in Arabidopsis thaliana Root Hairs

Maruyama, H., Sasaki, T., Yamamoto, Y. & Wasaki, J., Jan 1 2019, In : Plant & cell physiology. 60, 1, p. 107-115 9 p.

Research output: Contribution to journalArticle

root hairs
malates
Arabidopsis
Phosphorus
exudation
1 Citation (Scopus)

A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localising IRO2 to the nucleus in rice

Wang, S., Li, L., Ying, Y., Wang, J., Shao, J. F., Yamaji, N., Whelan, J., Ma, J. F. & Shou, H., Jan 1 2019, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

Basic Helix-Loop-Helix Transcription Factors
Transcription Factors
Iron
transcription factors
iron
1 Citation (Scopus)

A Vacuolar Phytosiderophore Transporter Alters Iron and Zinc Accumulation in Polished Rice Grains

Che, J., Yokosho, K., Yamaji, N. & Ma, J. F., Sep 1 2019, In : Plant physiology. 181, 1, p. 276-288 13 p.

Research output: Contribution to journalArticle

Open Access
phytosiderophores
transporters
Zinc
Iron
zinc

Bacteria with natural chemotaxis towards methanol revealed by chemotaxis fishing technique

Tola, Y. H., Fujitani, Y. & Tani, A., Nov 1 2019, In : Bioscience, biotechnology, and biochemistry. 83, 11, p. 2163-2171 9 p.

Research output: Contribution to journalArticle

Chemotaxis
Methanol
Bacteria
Methylobacterium
Acinetobacter
1 Citation (Scopus)
atomic absorption spectrometry
Laser Therapy
lasers
Minerals
transporters

Biosynthesis of phenylamide phytoalexins in pathogen-infected barley

Ube, N., Yabuta, Y., Tohnooka, T., Ueno, K., Taketa, S. & Ishihara, A., Nov 2019, In : International journal of molecular sciences. 20, 22, 5541.

Research output: Contribution to journalArticle

Open Access
tryptamines
barley
Gene encoding
biosynthesis
Spectroscopic analysis
1 Citation (Scopus)

Brown planthopper honeydew-associated symbiotic microbes elicit momilactones in rice

Wari, D., Alamgir, K. M., Mujiono, K., Hojo, Y., Tani, A., Shinya, T., Nakatani, H. & Galis, I., Jan 1 2019, In : Plant signaling & behavior. 14, 11, 1 p.

Research output: Contribution to journalArticle

microsymbionts
Nilaparvata lugens
honeydew
rice
phytoalexins

Changes in the Distribution of Pectin in Root Border Cells Under Aluminum Stress

Nagayama, T., Nakamura, A., Yamaji, N., Satoh, S., Furukawa, J. & Iwai, H., Oct 2 2019, In : Frontiers in Plant Science. 10, 1216.

Research output: Contribution to journalArticle

Open Access
pectins
aluminum
root tips
cells
rice
2 Citations (Scopus)

Characterization of sulfur-compound metabolism underlying wax-ester fermentation in Euglena gracilis

Yamada, K., Nitta, T., Atsuji, K., Shiroyama, M., Inoue, K., Higuchi, C., Nitta, N., Oshiro, S., Mochida, K., Iwata, O., Ohtsu, I. & Suzuki, K., Jan 29 2019, In : Scientific Reports. 9, 1, p. 853 853.

Research output: Contribution to journalArticle

Euglena gracilis
Sulfur Compounds
Waxes
Fermentation
Esters
3 Citations (Scopus)

Computer vision-based phenotyping for improvement of plant productivity: a machine learning perspective

Mochida, K., Koda, S., Inoue, K., Hirayama, T., Tanaka, S., Nishii, R. & Melgani, F., Jan 1 2019, In : GigaScience. 8, 1

Research output: Contribution to journalArticle

Computer vision
Learning systems
Productivity
Unmanned vehicles
Agriculture

Development of genome-wide SNP markers for barley via reference- Based RNA-seq analysis

Tanaka, T., Ishikawa, G., Ogiso-Tanaka, E., Yanagisawa, T. & Sato, K., Apr 16 2019, In : Frontiers in Plant Science. 10, 577.

Research output: Contribution to journalArticle

Open Access
barley
RNA
genome
genetic polymorphism
breeding
6 Citations (Scopus)
Antiviral Agents
RNA Interference
Small Interfering RNA
Acetyltransferases
Genes
7 Citations (Scopus)

Energy costs of salinity tolerance in crop plants

Tyerman, S. D., Munns, R., Fricke, W., Arsova, B., Barkla, B. J., Bose, J., Bramley, H., Byrt, C., Chen, Z., Colmer, T. D., Cuin, T., Day, D. A., Foster, KJ., Gilliham, M., Henderson, S. W., Horie, T., Jenkins, C. L. D., Kaiser, B. N., Katsuhara, M., Plett, D. & 12 others, Miklavcic, S. J., Roy, S. J., Rubio, F., Shabala, S., Shelden, M., Soole, K., Taylor, N. L., Tester, M., Watt, M., Wege, S., Wegner, L. H. & Wen, Z., Jan 1 2019, In : New Phytologist. 221, 1, p. 25-29 5 p.

Research output: Contribution to journalArticle

Open Access
cell organelle
plant water relations
plant breeding
salinity tolerance
bioenergetics
eutrophication
algal bloom
bacterium
lake
water
2 Citations (Scopus)

Functional evolution of nodulin 26-like intrinsic proteins: from bacterial arsenic detoxification to plant nutrient transport

Pommerrenig, B., Diehn, T. A., Bernhardt, N., Bienert, M. D., Mitani-Ueno, N., Fuge, J., Bieber, A., Spitzer, C., Bräutigam, A., Ma, J. F., Chaumont, F. & Bienert, G. P., Jan 1 2019, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

Open Access
nodulins
nutrient transport
Bacterial Proteins
Arsenic
arsenic

Functional screening of salt tolerance genes from a halophyte Sporobolus virginicus and transcriptomic and metabolomic analysis of salt tolerant plants expressing glycine-rich RNA-binding protein

Tada, Y., Kawano, R., Komatsubara, S., Nishimura, H., Katsuhara, M., Ozaki, S., Terashima, S., Yano, K., Endo, C., Sato, M., Okamoto, M., Sawada, Y., Hirai, M. Y. & Kurusu, T., Jan 1 2019, In : Plant Science. 278, p. 54-63 10 p.

Research output: Contribution to journalArticle

Salt-Tolerant Plants
Sporobolus virginicus
Salt-Tolerance
RNA-binding proteins
Metabolomics
1 Citation (Scopus)

Genetic architecture of leaf photosynthesis in rice revealed by different types of reciprocal mapping populations

Adachi, S., Yamamoto, T., Nakae, T., Yamashita, M., Uchida, M., Karimata, R., Ichihara, N., Soda, K., Ochiai, T., Ao, R., Otsuka, C., Nakano, R., Takai, T., Ikka, T., Kondo, K., Ueda, T., Ookawa, T., Hirasawa, T. & Lawson, T., Oct 15 2019, In : Journal of experimental botany. 70, 19, p. 5131-5144 14 p.

Research output: Contribution to journalArticle

Open Access
Quantitative Trait Loci
Photosynthesis
quantitative trait loci
Alleles
photosynthesis

Genetic Variation for Seed Metabolite Levels in Brachypodium distachyon

Onda, Y., Inoue, K., Sawada, Y., Shimizu, M., Takahagi, K., Uehara-Yamaguchi, Y., Hirai, M. Y., Garvin, D. F. & Mochida, K., May 11 2019, In : International journal of molecular sciences. 20, 9

Research output: Contribution to journalArticle

Open Access
Brachypodium
metabolites
Quantitative Trait Loci
Metabolites
Seed
3 Citations (Scopus)

Genome-Edited Triple-Recessive Mutation Alters Seed Dormancy in Wheat

Abe, F., Haque, E., Hisano, H., Tanaka, T., Kamiya, Y., Mikami, M., Kawaura, K., Endo, M., Onishi, K., Hayashi, T. & Sato, K., Jul 30 2019, In : Cell Reports. 28, 5, p. 1362-1369.e4

Research output: Contribution to journalArticle

Open Access
Plant Dormancy
Triticum
Seed
Clustered Regularly Interspaced Short Palindromic Repeats
Genes
1 Citation (Scopus)
RNA Sequence Analysis
Triticum
Genome
Diploidy
Single Nucleotide Polymorphism
1 Citation (Scopus)

Global transcriptome analyses reveal that infection with chrysanthemum stunt viroid (CSVd) affects gene expression profile of chrysanthemum plants, but the genes involved in plant hormone metabolism and signaling may not be silencing target of CSVd-siRNAs

Takino, H., Kitajima, S., Hirano, S., Oka, M., Matsuura, T., Ikeda, Y., Kojima, M., Takebayashi, Y., Sakakibara, H. & Mino, M., Jun 1 2019, In : Plant Gene. 18, 100181.

Research output: Contribution to journalArticle

Chrysanthemum stunt viroid
Viroids
Chrysanthemum
hormone metabolism
Plant Genes
1 Citation (Scopus)

High-Affinity K+ Transporters from a Halophyte, Sporobolus virginicus, Mediate Both K+ and Na+ Transport in Transgenic Arabidopsis, X. laevis Oocytes and Yeast

Tada, Y., Endo, C., Katsuhara, M., Horie, T., Shibasaka, M., Nakahara, Y. & Kurusu, T., Jan 1 2019, In : Plant & cell physiology. 60, 1, p. 176-187 12 p.

Research output: Contribution to journalArticle

Sporobolus virginicus
Xylem
Arabidopsis
Oocytes
xylem

High temperature causes breakdown of S haplotype-dependent stigmatic self-incompatibility in self-incompatible Arabidopsis thaliana

Yamamoto, M., Nishimura, K., Kitashiba, H., Sakamoto, W., Nishio, T. & Wilson, Z., Oct 24 2019, In : Journal of experimental botany. 70, 20, p. 5745-5751 7 p.

Research output: Contribution to journalArticle

Open Access
Arabidopsis
Haplotypes
haplotypes
Arabidopsis thaliana
Temperature
2 Citations (Scopus)

Honeydew-associated microbes elicit defense responses against brown planthopper in rice

Wari, D., Kabir, M. A., Mujiono, K., Hojo, Y., Shinya, T., Tani, A., Nakatani, H. & Galis, I., Mar 11 2019, In : Journal of experimental botany. 70, 5, p. 1683-1696 14 p.

Research output: Contribution to journalArticle

Open Access
Nilaparvata lugens
honeydew
Herbivory
microorganisms
rice

Horizontal transfer of a retrotransposon from the rice planthopper to the genome of an insect DNA virus

Yang, Q., Zhang, Y., Ida Bagus, A., Liao, Z., Kondo, H., Lu, Y., Cheng, Y., Li, L., He, Y., He, Y., Qi, Y., Sun, Z., Wu, Y., Yan, F., Chen, J. & Li, J., Mar 1 2019, In : Journal of Virology. 93, 6, e01516-18.

Research output: Contribution to journalArticle

Open Access
Insect Viruses
DNA viruses
Retroelements
Fulgoroidea
DNA Viruses
1 Citation (Scopus)

ICTV Virus Taxonomy Profile: Megabirnaviridae

Sato, Y., Miyazaki, N., Kanematsu, S., Xie, J., Ghabrial, S. A., Hillman, B. I., Suzuki, N. & Ictv Report Consortium, R. C., Sep 1 2019, In : The Journal of general virology. 100, 9, p. 1269-1270 2 p.

Research output: Contribution to journalArticle

Open Access
Genome
Viruses
5' Untranslated Regions
Open Reading Frames
Fungi
1 Citation (Scopus)

Identification of a Novel Hypovirulence-Inducing Hypovirus from Alternaria alternata

Li, H., Bian, R., Liu, Q., Yang, L., Pang, T., Salaipeth, L., Ida Bagus, A., Kondo, H. & Sun, L., Jan 1 2019, In : Frontiers in Microbiology. 10, MAY, 1076.

Research output: Contribution to journalArticle

Open Access
Alternaria
Virulence
Malus
Viruses
Fungi
2 Citations (Scopus)

Identification of phenylamide phytoalexins and characterization of inducible phenylamide metabolism in wheat

Ube, N., Harada, D., Katsuyama, Y., Osaki-Oka, K., Tonooka, T., Ueno, K., Taketa, S. & Ishihara, A., Nov 1 2019, In : Phytochemistry. 167, 112098.

Research output: Contribution to journalArticle

phytoalexins
amides
Metabolism
Amides
Triticum
lodging resistance
Quantitative Trait Loci
inbred lines
quantitative trait loci
rice
1 Citation (Scopus)

Imaging Amyloplasts in the Developing Endosperm of Barley and Rice

Matsushima, R. & Hisano, H., Mar 6 2019, In : Scientific reports. 9, 1, p. 3745 3745.

Research output: Contribution to journalArticle

Endosperm
Plastids
Hordeum
Starch
Peptides
3 Citations (Scopus)

Impaired psii proteostasis promotes retrograde signaling via salicylic acid1

Duan, J., Lee, K. P., Dogra, V., Zhang, S., Liu, K., Caceres-Moreno, C., Lv, S., Xing, W., Kato, Y., Sakamoto, W., Liu, R., Macho, A. P. & Kim, C., Aug 1 2019, In : Plant physiology. 180, 4, p. 2182-2197 16 p.

Research output: Contribution to journalArticle

Salicylic Acid
salicylic acid
homeostasis
Homeostasis
Chloroplasts
7 Citations (Scopus)

Investigation of host range of and host defense against a mitochondrially replicating mitovirus

Shahi, S., Eusebio-Cope, A., Kondo, H., Hillman, B. I. & Suzuki, N., Mar 1 2019, In : Journal of Virology. 93, 6, e01503-18.

Research output: Contribution to journalArticle

Mitovirus
Cryphonectria parasitica
Host Specificity
host range
RNA Interference
2 Citations (Scopus)

Isolation and characterization of a novel mycovirus infecting an edible mushroom, Grifola frondosa

Komatsu, A., Kondo, H., Sato, M., Kurahashi, A., Nishibori, K., Suzuki, N. & Fujimori, F., Jul 1 2019, In : Mycoscience. 60, 4, p. 211-220 10 p.

Research output: Contribution to journalArticle

Grifola frondosa
Partitivirus
mushroom
mushrooms
RNA
1 Citation (Scopus)

Lanthanide-dependent methanol dehydrogenase from the legume symbiotic nitrogen-fixing bacterium Bradyrhizobium diazoefficiens strain USDA110

Wang, L., Suganuma, S., Hibino, A., Mitsui, R., Tani, A., Matsumoto, T., Ebihara, A., Fitriyanto, N. A., Pertiwiningrum, A., Shimada, M., Hayakawa, T. & Nakagawa, T., Nov 1 2019, In : Enzyme and Microbial Technology. 130, 109371.

Research output: Contribution to journalArticle

Bradyrhizobium
Lanthanoid Series Elements
Rare earth elements
Fabaceae
Methanol
2 Citations (Scopus)

LARGE GRAIN Encodes a Putative RNA-Binding Protein that Regulates Spikelet Hull Length in Rice

Chiou, W. Y., Kawamoto, T., Himi, E., Rikiishi, K., Sugimoto, M., Hayashi-Tsugane, M., Tsugane, K. & Maekawa, M., Mar 1 2019, In : Plant and Cell Physiology. 60, 3, p. 503-515 13 p.

Research output: Contribution to journalArticle

RNA-binding proteins
RNA-Binding Proteins
hulls
inflorescences
rice

Low temperature storage stimulates fruit softening and sugar accumulation without ethylene and aroma volatile production in kiwifruit

Mitalo, O. W., Tokiwa, S., Kondo, Y., Otsuki, T., Galis, I., Suezawa, K., Kataoka, I., Doan, A. T., Nakano, R., Ushijima, K. & Kubo, Y., Jul 9 2019, In : Frontiers in Plant Science. 10, 888.

Research output: Contribution to journalArticle

Open Access
propylene
kiwifruit
storage temperature
ethylene
odors
1 Citation (Scopus)

Magnesium Deficiency Triggers SGR-Mediated Chlorophyll Degradation for Magnesium Remobilization

Peng, Y. Y., Liao, L. L., Liu, S., Nie, M. M., Li, J., Zhang, L. D., Ma, J. F. & Chen, Z. C., Sep 1 2019, In : Plant physiology. 181, 1, p. 262-275 14 p.

Research output: Contribution to journalArticle

Open Access
Magnesium Deficiency
Chlorophyll
Magnesium
magnesium
chlorophyll
2 Citations (Scopus)

Molecular and biological characterization of a novel botybirnavirus identified from a Pakistani isolate of Alternaria alternata

Shamsi, W., Sato, Y., Jamal, A., Shahi, S., Kondo, H., Suzuki, N. & Bhatti, M. F., Apr 2 2019, In : Virus Research. 263, p. 119-128 10 p.

Research output: Contribution to journalArticle

Alternaria
Double-Stranded RNA
RNA Viruses
Viruses
Proteins

Next generation long-culm rice with superior lodging resistance and high grain yield, Monster Rice 1

Nomura, T., Arakawa, N., Yamamoto, T., Ueda, T., Adachi, S., Yonemaru, J. I., Abe, A., Takagi, H., Yokoyama, T. & Ookawa, T., Jan 1 2019, In : PloS one. 14, 8, e0221424.

Research output: Contribution to journalArticle

Open Access
lodging resistance
Bending moments
Biomass
grain yield
rice

Novel method for evaluation of anaerobic germination in rice and its application to diverse genetic collections

Kuya, N., Sun, J., Iijima, K., Venuprasad, R. & Yamamoto, T., Jan 1 2019, In : Breeding Science. 69, 4, p. 633-639 7 p.

Research output: Contribution to journalArticle

Open Access
Germination
germination
rice
Water
quantitative trait loci
1 Citation (Scopus)

Novel victorivirus from a pakistani isolate of alternaria alternata lacking a typical translational stop/restart sequence signature

Jamal, A., Sato, Y., Shahi, S., Shamsi, W., Kondo, H. & Suzuki, N., Jun 1 2019, In : Viruses. 11, 6, 577.

Research output: Contribution to journalArticle

Open Access
Alternaria
RNA Replicase
Totivirus
Capsid Proteins
RNA Interference